Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0334 ATGGGTCAGGGAACACCAGGAGGTTTGAACAGGCAAGGTCTTCCGGGGGACCGGAAGCCGGACGGCGGTGACAAGAAGGAGAAGAAGTTTGAGCCAGCGGCGCCGCCGGCTCGAGTAGGGCGGAAGCAGCGAAAACAGAAGGGGCCGGAGGCGGCGGCGCGGTTGCCGACGGTGACGCCGCTTTCCAAGTGCAAGCTGCGGCTGCTAAAGCTGGAGCGCATAAAGGACTACCTTTTGATGGAGGAGGAGTTCGTGGCTAACCAGGAGAGGCTGAAGCCGCAGGAGGAGAAGGCCGAGGAAGACAGATCCAAGGTCGATGATCTCAGGGGTTCCCCTATGAGTGTTGGCAACCTCGAGGAACTCATCGACGAGAATCACGCCATTGTTTCGTCCTCGGTGGGTCCTGAGTACTACGTTGGTATCTTGTCTTTCGTCGATAAGGATCAGCTCGAGCCTGGATGTGCAATTCTGATGCATAACAAGGTTCTCTCTGTCGTTGGGCTTCTTCAAGATGAAGTTGATCCTATGGTATCTGTCATGAAGGTTGAGAAGGCACCTTTGGAATCATATGCTGACATTGGTGGTTTAGATGCCCAGATACAGGAAATTAAAGAAGCAGTTGAGCTTCCACTGACGCATCCTGAACTGTATGAAGACATTGGTATCAAGCCTCCTAAGGGAGTCATTTTATATGGAGAACCTGGAACCGGGAAGACATTACTTGCAAAGGCCGTGGCAAACTCAACATCAGCAACCTTCTTACGTGTTGTTGGTAGTGAATTAATACAAAAATACTTGGGAGATGGTCCAAAACTTGTAAGGGAACTTTTCCGGGTTGCTGATGATCTTTCCCCATCTATTGTTTTCATTGATGAAATTGATGCTGTTGGTACGAAGAGGTATGATGCCCACTCAGGTGGAGAACGTGAGATTCAGAGGACTATGTTGGAGTTGCTGAACCAGTTAGATGGTTTTGATTCAAGAGGAGATGTGAAAGTGATTCTTGCAACCAACAGAATTGAAAGCCTTGATCCAGCCCTGCTGCGGCCTGGTCGAATAGACAGGAAGATTGAGTTTCCTCTCCCTGATATCAAAACAAGAAGACGCATTTTCCAGATTCACACATCAAGGATGACATTAGCTGATGATGTCAACTTAGAAGAATTTGTTATGACTAAGGATGAGTTCTCTGGAGCTGATATAAAAGCTATATGTACTGAAGCTGGCTTACTTGCATTACGGGAACGACGAATGAAGGTGACGCATGCCGACTTCAAGAAGGCTAAGGATAAAGTTATGTTTAAGAAGAAAGAAGGGGTGCCAGAAGGACTCTATATGTGA 1341 0.4802 MGQGTPGGLNRQGLPGDRKPDGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0334 446 Pfam AAA+ lid domain 383 427 IPR041569 -
Vra3g0334 446 Gene3D - 113 180 IPR012340 -
Vra3g0334 446 PANTHER BNAA08G13550D PROTEIN 19 446 - -
Vra3g0334 446 Pfam ATPase family associated with various cellular activities (AAA) 228 361 IPR003959 GO:0005524|GO:0016887
Vra3g0334 446 ProSitePatterns AAA-protein family signature. 331 349 IPR003960 GO:0005524|GO:0016887
Vra3g0334 446 MobiDBLite consensus disorder prediction 90 110 - -
Vra3g0334 446 Pfam Proteasomal ATPase OB C-terminal domain 115 168 IPR032501 -
Vra3g0334 446 MobiDBLite consensus disorder prediction 90 108 - -
Vra3g0334 446 MobiDBLite consensus disorder prediction 1 55 - -
Vra3g0334 446 MobiDBLite consensus disorder prediction 17 35 - -
Vra3g0334 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 439 IPR027417 -
Vra3g0334 446 CDD AAA 194 361 - -
Vra3g0334 446 Gene3D - 366 440 - -
Vra3g0334 446 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 19 446 - -
Vra3g0334 446 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 81 433 IPR005937 GO:0005737|GO:0030163|GO:0036402
Vra3g0334 446 Gene3D - 181 361 IPR027417 -
Vra3g0334 446 SMART AAA_5 224 363 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0334 Vra-Chr3 3985076 3989194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0334 189 431 Miscellaneous Gene Families AT3G47060 44.355 4.05e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0334 K03062 - gmx:100798835 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0334 3 3985076 3989194 Vra3g0334 3 3985076 3989194 ECH