Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0330 ATGGAGGAGGCGCTGGAACTGTCACGCGCTAAGGACACGAAGGAGAGGATGGCGGGCGTGGAGCGCCTCCACCAACTTCTGGAAGCTTCCAGAAAGAGCCTCTCGTCTTCCGAGGTGACTTCGCTCGTCGACACTTGTATGGATCTCTTGAAGGACAATAACTTCCGCGTCTCGCAGGGCGCGCTGCAGGCGCTCGCCTCCGCCGCCGTCCTCTCCGGTGACCACTTCAAGCTTCACTTCAACGCACTGCTCCCCGCTGTCGTCGACCGTCTTGGCGACGCCAAACAGCCTGTTCGAGACGCCGCCAGGCGCCTCTTGCTCACTCTCATGGAGGTTTCTTCTCCAACTATAATTGTTGAAAGGGCAGGGTCCTTTGCTTGGGCACATAAAAGCTGGAGAGTTAGAGAGGAGTTTACGCGAACTGTCACAGCTGCAATTAATTTATTTGCATCTACAGAGCTCCCACTTCAACGGGCTATCCTTCCCCCTGTTTTGCATTTGCTTAACGATCCAAATCCTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAAGAAATGTATACACAAGCAGGGCCTCAATTTCGTGATGAACTTCACCGTCACAATCTTCCTTCATCTTTGGTGAAAGATATTAATGCCAGGCTTGAAGGGATTCAGCCAAAAGTTCGCTCTACAGATGGTATTCCAGGTGGATATATTACTGGGGAAATTAAGCATTTGAGTGTTAATCCCAAGAAAAGTAGTCCAAAGGCTAAAAGTTCCTCCAGGGAGACCTCTCTTTTCGGAGGGGAAGGTGACATCACTGAGAAACCCATAGACCCTGTGAAGGTATATTCAGATAAGGAGTTAACCAGGGAAATTGAGAAGATTGCATCTACTCTTGTGCCTGAAAAAGACTGGTCAATTCGAATTGCTGCTATGCAGAGAGTTGAAGGTCTTGTTATAGGAGGTGCTACTGATTATCCATGTTTTCGAGGGCTCTTGAAGCAACTTGTTGGACCTTTAAACACACAATTGTCAGACCGAAGATCTAGCATTGTGAAGCAGGCGTGCCATCTATTGTGCTTTTTGTCAAAGGATCTCTTGGGTGATTTTGAAGCATGTGCCGAAATGTTTATACCAGTAAGTTGGCCTAGTTATGTTGGATTTATCACAATTTTGATGATTTTGAAATTATTAATTCTTGATCTGATAACTCAGGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGTTGCGCAACTGCAAAGTTTCTCGGGTTCTTCCCCGTATAGCTGATTGTGCAAAAAATGATCGAAATGCTGTACTTCGTGCAAGGTGTTGTGAATATGCTCTTTTGGTCCTGGAACATTGGCCTGATGCACCAGAAATACATCGATCCGCTGATTTATATGAGGATATGATAAAGTGTTGTGTTTCAGATGCAATGAGTGAGGTTCGATCTACTGCAAGGATGTGCTATAGAATGTTTGCAAAAACTTGGCCAGAGCGATCTCGACGTCTATTTGCATCCTTTGACCATGCCATTCAAAGGTTAATAAATGAAGAGGATGGAGGAATACATCGGCGACATGCTTCACCTTCCATTCGAGATAGAGGGGCATTGACGTCATTGGCTAGTCAGACCTCCGCTCCCTCTAATCTACCTGGTTATGGAACTTCTGCTATTGTTGCGATGGATAGAAGTTCAAGTATATCATCAGGGACATCTATCTCCTCTGGTATACTTCTATCACAAGCTAAGTCACTTGGTAAGGGTACAGAACGTAGTTTGGAGAGCATGTTACATGCAAGCAAGCAGAAGGTTTCTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTTCCGGTCATCGAGTTTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACCTTTCCCTGCTGCTGTCTCCGCAACTAATCATCTGACAAGCTCTTTAACAACAGAATCAACCACTTCTGGCATCAATAAAGGTAGTAACCGAAATGGTGGTCTTGGTTTGTCTGACATAATCACCCAGATTCAAGCTTCAAAGGATTCTGCCAAGTTGTCCTATCATAGCAATGTTGGTATCGAACCTTTATCATCAATATCATCATATTCAAGTAAAAGGGCCTCTGACAGATTACAAGAAAGAAGTTCACTTGATGATAACAGTGATATTAGAGAGACTAGGAGATTTATAAAATCCAACCACGATAAGCAGTATTTGGATGCCCCTTATAGAGATGGGAACTTTAGGGAATCACATAATAGTTATGTGCCTAATTTCCAGAGACCGCTTTTGAGAAAGAATGTGGCTGGACGCATGTCTGCTGGCAGGAGGAGGAGTTTTGATGATAATCAGCTATCTCTTGGAGAGATGCCAAATTATGCAGAAGGACCCTCATCTCTTCACGAAGCTTTGAGTGAAGGACTTAGTTCAGGTTCTGACTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTTCATTCTTTGTTGCAGCAAGGGCCAAAGGGAGTTATTGAAGTTGTTCAGAACTTTGAGAAGGTAATGAAATTGTTTTTCCAGCACTTGGATGATCCCCATCATAAAGTTGCACAAGCTGCTCTTTCAACACTTGCAGATATTGTTCCAGCATGCCGAAAGCCTTTTGAAGGTTACATGGAGAGAATATTACCCCATGTTTTTTCTCGGTTAATTGATCCTAAAGAACTTGTCAGGCAGCCATGTTCAACAACTTTGGAAGTTGTGAGCAAAACTTACAGTATAGATTCTCTTTTACCGGCATTATTACGCTCACTAGATGAACAGAGGTCCCCAAAGGCTAAATTGGCTGTTATTGAATTTGCAATCAATTCCTTTAACAAACATGCTATGAATCCAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCTAAGTTAACCCCTTTGGTTCATGACAAAAATACAAAGCTTAAAGAAGCAGCCATTACATGCATTATATCAGTGTATTCACACTTTGATTCGATTGCTGTTCTTAATTTCATTCTGAGTTTGTCAGTTGAAGAACAAAATTCTTTGAGACGAGCTTTAAAACAATATACCCCTCGCATTGAAGTAGACCTAATAAACTATCTGCAGAACAAGAAAGAAAGACAACGTTCTAAGTCTTCCTATGATTCATCTGATGTGGTGGGAACATCCTCTGAAGATGGATATGTTGGTTACTCTAGGAAGGCTCATTACCTTGGAAGGTATTCTGCTGGATCCCTTGATGGTGATGGTGGCAGGAAATGGAGTTCCCAGGATTCAACACTAGTGAAAGCTAGTCTTGGTCAAACATCATCTGGTGAAACTCAGGAACATCTGTATCAAAATTTTGAAACTGATCCTAATAGTGGCAGTCTTACTTCAAAAACTAAGGATCTTGCGTATGCAGTCAATCCTATGGGTCAAAACTTTACCTCTCAATCTAGCCAACATAGAAATGTGGACAGTAGCATAAACTTGGAGGGTCTTTCAACTCCTCGTCTAGATGTAAATGGTTTGATGTTATCTGAGCATTTAAATGTTGCGGAAGGCTATGTAAATGACAAAGAACATTCTTCTGAATTGGCACTTAATCATCACACAGCCGAAGATGTAAAGATTAACTCCATAACAGAAACAGGACCAAGCATTCCTCAAATTCTTCATATGGTATGCAGTGGGGGTGATGGAAGCCCTGTTTCAAGTAAACGAACTGCACTTCAACAATTAGTTGATGCTTCTATATCAAATGATCATTCTATTTGGACCAAGTACTTCAATCAGATTTTGACAGTTGTGCTTGAGGTACTGGATGATTCAGATTCCTCGGTCAAAGAGCTTGCTCTTTCACTGATAGTTGAAATGCTTAAAAACCAGAAAGGCGACATGGAGAATTCTGTTGAGATTGTAATTGAGAAGCTGCTTCACGTTACTAAGGATATCATTCCTAAGGTCTCCAATGAAGCAGAGCACTGCCTGACCATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGTGTCATTGTCCCTCTACTGGTTACTGAGGATGAGAAAACACTTGTCATTTGCATAAATTGCTTAACAAAGCTTGTAGGGCGGCTTTCTCAGGAGGAACTGATGGCTCAGTTACCCTCGTTTCTGCCCGCTCTTTTTGAAGCCTTTGGTAACCAGAGTGCAGATGTTCGTAAGACCGTTGTTTTCTGCCTAGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCGTATTTGCAAGGGCTTAACAGCACGCAGTTGAAGTTGGTCACCATTTATGCAAATCGAATCTCACAAGCCAGGACAGGCAAAACAATTGATGCCGTTCAAGATTAG 4416 0.4248 MEEALELSRAKDTKERMAGVERLHQLLEASRKSLSSSEVTSLVDTCMDLLKDNNFRVSQGALQALASAAVLSGDHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWAHKSWRVREEFTRTVTAAINLFASTELPLQRAILPPVLHLLNDPNPAVREAAILCIEEMYTQAGPQFRDELHRHNLPSSLVKDINARLEGIQPKVRSTDGIPGGYITGEIKHLSVNPKKSSPKAKSSSRETSLFGGEGDITEKPIDPVKVYSDKELTREIEKIASTLVPEKDWSIRIAAMQRVEGLVIGGATDYPCFRGLLKQLVGPLNTQLSDRRSSIVKQACHLLCFLSKDLLGDFEACAEMFIPVSWPSYVGFITILMILKLLILDLITQVLFKLVVITVLVIAESADNCIKTMLRNCKVSRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIHRSADLYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFASFDHAIQRLINEEDGGIHRRHASPSIRDRGALTSLASQTSAPSNLPGYGTSAIVAMDRSSSISSGTSISSGILLSQAKSLGKGTERSLESMLHASKQKVSAIESMLRGLDLSDKHNSSFRSSSLDLGVDPPSSRDPPFPAAVSATNHLTSSLTTESTTSGINKGSNRNGGLGLSDIITQIQASKDSAKLSYHSNVGIEPLSSISSYSSKRASDRLQERSSLDDNSDIRETRRFIKSNHDKQYLDAPYRDGNFRESHNSYVPNFQRPLLRKNVAGRMSAGRRRSFDDNQLSLGEMPNYAEGPSSLHEALSEGLSSGSDWSARVAAFNYLHSLLQQGPKGVIEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERILPHVFSRLIDPKELVRQPCSTTLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHAMNPEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYSHFDSIAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLINYLQNKKERQRSKSSYDSSDVVGTSSEDGYVGYSRKAHYLGRYSAGSLDGDGGRKWSSQDSTLVKASLGQTSSGETQEHLYQNFETDPNSGSLTSKTKDLAYAVNPMGQNFTSQSSQHRNVDSSINLEGLSTPRLDVNGLMLSEHLNVAEGYVNDKEHSSELALNHHTAEDVKINSITETGPSIPQILHMVCSGGDGSPVSSKRTALQQLVDASISNDHSIWTKYFNQILTVVLEVLDDSDSSVKELALSLIVEMLKNQKGDMENSVEIVIEKLLHVTKDIIPKVSNEAEHCLTIVLSQYDPFRCLSVIVPLLVTEDEKTLVICINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKTIDAVQD* 1472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0330 1471 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Vra3g0330 1471 Pfam CLASP N terminal 828 1018 IPR024395 -
Vra3g0330 1471 Pfam CLASP N terminal 284 375 IPR024395 -
Vra3g0330 1471 Pfam CLASP N terminal 395 526 IPR024395 -
Vra3g0330 1471 Gene3D - 1 221 IPR011989 -
Vra3g0330 1471 Gene3D - 1254 1463 IPR011989 -
Vra3g0330 1471 SUPERFAMILY ARM repeat 4 360 IPR016024 -
Vra3g0330 1471 MobiDBLite consensus disorder prediction 243 267 - -
Vra3g0330 1471 SUPERFAMILY ARM repeat 292 1461 IPR016024 -
Vra3g0330 1471 Gene3D - 267 532 IPR011989 -
Vra3g0330 1471 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Vra3g0330 1471 MobiDBLite consensus disorder prediction 659 686 - -
Vra3g0330 1471 PANTHER PROTEIN, PUTATIVE-RELATED 28 389 - -
Vra3g0330 1471 PANTHER PROTEIN, PUTATIVE-RELATED 396 1463 - -
Vra3g0330 1471 PANTHER CLASP 28 389 - -
Vra3g0330 1471 PANTHER CLASP 396 1463 - -
Vra3g0330 1471 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
Vra3g0330 1471 MobiDBLite consensus disorder prediction 246 261 - -
Vra3g0330 1471 SMART TOG_3 1224 1463 IPR034085 -
Vra3g0330 1471 SMART TOG_3 3 224 IPR034085 -
Vra3g0330 1471 SMART TOG_3 806 1055 IPR034085 -
Vra3g0330 1471 Gene3D - 822 1046 IPR011989 -
Vra3g0330 1471 MobiDBLite consensus disorder prediction 635 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0330 Vra-Chr3 3934423 3947736 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0330 K16578 - gmx:100820523 2605.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0330 3 3934423 3947736 Vra3g0330 3 3934423 3947736 ECH