Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0325 ATGATGGCGTGCATGTCGAAGCTGTTCGGCGTAACCAGTGGCAGTGTCCTTCATAATCTCGACTCACATCTTCGCTTCCAGCGCCGTTTCAATTTAATCAAAATGTCTTCCGACGCGCTTCCTCCTCTTCCCGAAAATCGCGTCGTCGTCGGGTACGGAATGACGGCGGTGGATTTCTTGGCTACGGTGGACCGATTTCCGAACCCCGACGATAAGGTCCGAAGCAGTTCGCTAAAGGTTGAAGGAGGCGGGAATGCCGGTAATGCGCTCACTTGCGCGGCTCGGCTCGGCTTGAAACCGAAGCTGATCTCCAAGATTGCCGACGATGCGCACGGCTTCGCTATATTGAAGGAGTTGGAAGCCGATGGCGTCGATACTAACTTCATTGTTGTATCCAAGGGTGGTAGCTCAACGTTTTCTTATGTACTAGTGGATAACCAAACAAAAACTCGCACCAGTATCTACACCCCTGGAGATCCTCCAATGATGGTAGATGACCTACCCCAGTCAACATTATTATCTGCATTTGATGGAGCAAGATTAGTTTATTTTGATGGAATGTTTCCCGAAACTGCTCTATTTGTTGCACAAGAGGCAGCTCGTAATAATATTCCTATTTTAGTTGAGGCAGAATCACCAAGGGAAGGGTTGGATGAGCTCATGAAGCTAGCTGACTTTGTTGTATGCTCTTCCAGATTTCCACAGGCTTGGACGCAAGCACCATCTATCCCGAGTGCACTGGTTGCCATGCTTTTAAGATTTCCAAATATCAACTTTGTAATTGTGACTTTGGGTGAAGATGGTTGTCTAATGTTAGAAAGAAGTGATGATGAGGATGCTGACATAGAAGAAATGGATGTAGAGAGTTTCTTAGAATTCTTATATAAAGGGAAAGGTGATAGATTGACTATCCCAACCTGCATACCATTGGAAGTGAAGAAATTCAGAGCAGATGGAATTGGAACAATTTGTGGGAGATTCTATATTGGAACAGCAGAGAATATACCAGATTCTGAGCTGGTTGATACAACTGGTGCTGGGGATGCATTTATTGGAGCGATTATGTATGCTATCTGTGCAAACATGGTGCCAGAGAAAATGTTGCCACTTGCTGCTCAAGTGGCAGCTACAAAGTGTAGAGCTTTGGGCGCTCGAAGTGGTCTTCCACATCGGTTAGATCCTCGATTGGCATCCTTTTTATGA 1203 0.4572 MMACMSKLFGVTSGSVLHNLDSHLRFQRRFNLIKMSSDALPPLPENRVVVGYGMTAVDFLATVDRFPNPDDKVRSSSLKVEGGGNAGNALTCAARLGLKPKLISKIADDAHGFAILKELEADGVDTNFIVVSKGGSSTFSYVLVDNQTKTRTSIYTPGDPPMMVDDLPQSTLLSAFDGARLVYFDGMFPETALFVAQEAARNNIPILVEAESPREGLDELMKLADFVVCSSRFPQAWTQAPSIPSALVAMLLRFPNINFVIVTLGEDGCLMLERSDDEDADIEEMDVESFLEFLYKGKGDRLTIPTCIPLEVKKFRADGIGTICGRFYIGTAENIPDSELVDTTGAGDAFIGAIMYAICANMVPEKMLPLAAQVAATKCRALGARSGLPHRLDPRLASFL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0325 400 SUPERFAMILY Ribokinase-like 49 391 IPR029056 -
Vra3g0325 400 Pfam pfkB family carbohydrate kinase 49 275 IPR011611 -
Vra3g0325 400 Pfam pfkB family carbohydrate kinase 333 390 IPR011611 -
Vra3g0325 400 PANTHER PFKB FAMILY CARBOHYDRATE KINASE 21 400 - -
Vra3g0325 400 Gene3D - 47 386 IPR029056 -
Vra3g0325 400 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 21 400 - -
Vra3g0325 400 PRINTS Ribokinase signature 51 72 IPR002139 GO:0016301
Vra3g0325 400 PRINTS Ribokinase signature 78 97 IPR002139 GO:0016301
Vra3g0325 400 PRINTS Ribokinase signature 260 271 IPR002139 GO:0016301
Vra3g0325 400 CDD ribokinase_group_B 48 390 - -
Vra3g0325 400 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 342 355 IPR002173 GO:0016773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0325 Vra-Chr3 3809359 3824429 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0325 - - gmx:100792838 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0325 3 3809359 3824429 Vra3g0325 3 3809359 3824429 ECH