Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0322 ATGGAGAATCCTTGCGAGGTACTCGGTACCGAAGGGTTGATTAGAAGGCATGAATTTGTGAGGATCATAATTCAGTGTCTATATTCATTAGGATACAGTAGCTCTGCCGCTTGTTTGGAATTAGAATCTGGCATTTCGTACAAGTCCAATGAGCTTAAGTTACTTGAATCATTTATATTGAATGGGAATTGGGACGATAGCATTGAGTATCTTAATTCGGTAAAGGATGTGTTGGGGGAAACAAGGGAATCTGCCTTGTTTCTTGTTTCCAGACAGTGTGTTAGGGAGTATTTGAATTGCGGGCAAGATGAGCTAGCTTTGGCGGTGTTAAGGAAACAGGTTTCTGCCTTGGATGTGGACAGGTGCAAAGTTCACAGTCTGGCCATGTGCATGCTCTCATTTAAGGACAGGGAGTTAGCTGTTGTTGATGAAAACGATGTTGTTGTACATGATCTGAGAAGAAAGTTGTTAGCAGATTTGGAAAGTTTGTTGCCTCCTCCTATATCAGTGCCTGAAGCAAGGCTGGAGCGCTTGGTAGAATCTACTGTTACGGCCTGGGTCGATTCGTGTATGTATCATAGTTCGTCGAATCAGATATCGCTTTATGAGGATCATCGCTGCAGCAGGGATCAGATTCCTACTAGAACGACTCAGATATTGACTGGACACAAAAATGAAGTTTGGTTTGTTCAATTTTCGAATAATGGGGAGTACCTGGCCTCTTCATCCAATGATTGCACAGCCATCATATGGAAGGTGCTGGAGGATGGGATATTGACACTGAAACACACACTTAATGGTCACCAACATGCTGTATCTTTTGTAGCATGGAGTCCTGATGACACCAAGTTACTAACATGTGGGAACACAGAAGTTTTGAAGCTATGGGATGTTGAAACAGGTACATGCAAGCGCACATTTGGGAATCAAGGCTTTGTTGTCAGCTCTTGCGCCTGGTTTCCCAACTCAAAACAGTTTGCGTGTGGCAGTTCCGATCCTGAAAAGGGAGTCTGCATGTGGGATTGTGATGGAAACGTGATCAAATCATGGAGAGGAATGAGGATGCCCAAGGTTGTAGATCTTGCCGTTACTCCAGACGGTGAGTATCTTATCAGCGTCTTTATGGATAAAGAAATTCGTATTCTGCATATGGGAACAAATGCAGAGCGAGTTATTTCAGAGGAGCACCCAATCACATCCCTTTCAGTCTCAGGAGATAGTAAGTTCTTCATTGTCAATCTCAACAGCCAGGAGATTCATATGTGGGATGTGGATGGGAAATGGGATAAGCCATCCAGGTTTAATGGCCACGAGCAACACAAGTATGTGATAAGGTCATGCTTTGGTGGATTAAACAACACTTTTATCGCCAGTGGTAGTGAAAATTCACAGGTATACATTTGGAACCGTCGGAATCCGACGCCTATAGAGGTTCTATCCGGACATTCCATGACTGTGAACTGTGTGAGCTGGAACCCGAAAATGCCACAAATGCTGGCATCTGCCAGTGATGATTATACGATTCGTATATGGGGACCCAGCTTCCAAAAAAACGAAGGCCAGGTTGAGTAG 1572 0.4396 MENPCEVLGTEGLIRRHEFVRIIIQCLYSLGYSSSAACLELESGISYKSNELKLLESFILNGNWDDSIEYLNSVKDVLGETRESALFLVSRQCVREYLNCGQDELALAVLRKQVSALDVDRCKVHSLAMCMLSFKDRELAVVDENDVVVHDLRRKLLADLESLLPPPISVPEARLERLVESTVTAWVDSCMYHSSSNQISLYEDHRCSRDQIPTRTTQILTGHKNEVWFVQFSNNGEYLASSSNDCTAIIWKVLEDGILTLKHTLNGHQHAVSFVAWSPDDTKLLTCGNTEVLKLWDVETGTCKRTFGNQGFVVSSCAWFPNSKQFACGSSDPEKGVCMWDCDGNVIKSWRGMRMPKVVDLAVTPDGEYLISVFMDKEIRILHMGTNAERVISEEHPITSLSVSGDSKFFIVNLNSQEIHMWDVDGKWDKPSRFNGHEQHKYVIRSCFGGLNNTFIASGSENSQVYIWNRRNPTPIEVLSGHSMTVNCVSWNPKMPQMLASASDDYTIRIWGPSFQKNEGQVE* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0322 523 SUPERFAMILY WD40 repeat-like 210 511 IPR036322 GO:0005515
Vra3g0322 523 SUPERFAMILY WD40 repeat-like 127 251 IPR036322 GO:0005515
Vra3g0322 523 Gene3D - 204 513 IPR015943 GO:0005515
Vra3g0322 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 253 - -
Vra3g0322 523 ProSiteProfiles LIS1 homology (LisH) motif profile. 15 47 IPR006594 GO:0005515
Vra3g0322 523 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515
Vra3g0322 523 Pfam WD domain, G-beta repeat 261 297 IPR001680 GO:0005515
Vra3g0322 523 Pfam WD domain, G-beta repeat 434 469 IPR001680 GO:0005515
Vra3g0322 523 Pfam WD domain, G-beta repeat 301 340 IPR001680 GO:0005515
Vra3g0322 523 Pfam WD domain, G-beta repeat 475 511 IPR001680 GO:0005515
Vra3g0322 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 301 - -
Vra3g0322 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 253 IPR001680 GO:0005515
Vra3g0322 523 SMART WD40_4 385 423 IPR001680 GO:0005515
Vra3g0322 523 SMART WD40_4 300 341 IPR001680 GO:0005515
Vra3g0322 523 SMART WD40_4 213 252 IPR001680 GO:0005515
Vra3g0322 523 SMART WD40_4 472 512 IPR001680 GO:0005515
Vra3g0322 523 SMART WD40_4 343 383 IPR001680 GO:0005515
Vra3g0322 523 SMART WD40_4 427 469 IPR001680 GO:0005515
Vra3g0322 523 SMART WD40_4 258 297 IPR001680 GO:0005515
Vra3g0322 523 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 48 105 IPR006595 -
Vra3g0322 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 511 IPR001680 GO:0005515
Vra3g0322 523 SMART ctlh 48 105 IPR006595 -
Vra3g0322 523 PANTHER WD REPEAT PROTEIN 26-RELATED 6 514 - -
Vra3g0322 523 SMART Lish 15 47 IPR006594 GO:0005515
Vra3g0322 523 CDD WD40 217 511 - -
Vra3g0322 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 479 511 - -
Vra3g0322 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0322 Vra-Chr3 3782684 3788399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0322 215 371 Miscellaneous Gene Families AT5G08390 28.662 6.80e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0322 K22382 - gmx:100818922 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0322 3 3782684 3788399 Vra3g0322 3 3782684 3788399 ECH