Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0320 ATGACGGGATTTTCTCGCTCGCGCGATCATGCTTCTTCCTCTTCGCACAATTCCAACAGCAGTGGTAGCAATGTATTCAATTTGCTCGCAAGGAGAGAAATCTCACCCCGGACCAAATATGTGGCCAAATGGCACTGGGTTGAAGCTTCTAAGTCAAAGTCTAGTCCTTATTCTCGTCCCAAGAATGAGGTTGTGAGAGATGCAAGACGCGGTCTCCTCTCATGGGTTGAGGCTGAGTCATTGCGGCATTTGTCAGCTAAGTATTGTCCCTTATTGCCTCCTCCTCGGTCTACTATTGCAGCAGCATTTAGTTCCGATGGGAAGGTTCTTGCCTCTACACACGGTGACCATACAGTGAAGATAATTGATTGTGAAACTGGAAGTTGCCTAAAGGTGTTAGTTGGCCATAGGAGAACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACATATACTTGCGAGTGGGAGCTTGGATCAAGAAGTTCGTTTATGGGATGCCAACACATCAGAGTGCATAATATCTCATCATTTCTACCGCCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCTGTTGCATCTGGCCACAAGTTGTACATATGGCACCACAACAAAAAAGGTGAAGCATCCTCTCCTATATTTGTGTTGAAGACAAAGCGCTCACTTCGGGCTGTGCATTTTCACCCACATGCCGCACCATATCTTTTAACTGCGGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACATCTCTTGGCTATTTACAATATCCTCCGCCTGCTGTTTTTGTCACAAATATTCAGCCTACAGAACATATTAGTTTGTCCACCGAACTACCTTATGTGTCATTACCTTTCTTTTTCATGCCCTCAGATACTCTTGACGAGTCAAGAACAGAACTACAGCATTCTAGTCATGATGTGGGCTCAGGTAGCATGCAAATTGAGTCTTCTGCCATGGTACAGTTACAAGCAGATACAAGTGCAACAGAGCAATATGAGACCACTGTGTCTCCCATGGATACATTCTCTGAGATGCCCACCACTCAAACTGGTACAGAATATCCCACCCATACTTCTTTCTCTAATGGAATGGGAGTTGGCCTCAGTAATCTCACAATGGATGGTATGGAGACTGATGAAACCAGACCTGCTGAAGGAAGCCAACATGGAAACTCTACTAATACCTATTCTTTTAATGGTGTGCTACATGGACTGTCTAGGCAAACTGCCAACCGTGGGGTTCCCTCTGAGTTGGGTCAATTTAACCAGTTTTTTCCTTCTAGTTCAAGAGATCCAAGTGCATGGGAGTTGCCTTTTCTGCAAGGATGGTTAATGGGTCAAAGCCAAGCTGGTGTTCCTTCAATGCTTCCTCACATGGGTGCTAGCCGTGACATTCTAGCCCAACAGATTGGTTCTTCCACAATGCCATCTAATCTTTCCAGTTCTAATAATGATGCAGCAATGCCATCTTCAGCAATAACTGGCAGCATCAGCATACCAGGTTCTTCAATGAGATCAGGTTTACGGAATCATTTTTCTCAATCCCGTCAACCTGTATCTGAATCAGGCAATCTTGCTACTTCTATTAATAATTCACATGATGGATCCGATATCCAAACAATCATGAGTCGAATTCAATCAGAACTTGCCGCCACATCAGTGGCTGCTGCAGCGGCGGCAGAGTTGCCCTGCACTGTGAAGTTAAGAGTGTGGTCACATGACATAAAAAATCCTTGTGTCCCACTTAATGCCGACAGATGTCGTCTAAACATACCACATGCTGTCCTTTGCAGCGAAATGGGTGCTCATTTTTCACCATGTGGTAGATTTTTGGCCGCCTGTGTTGCATGTATGCTTCCTCATATAGAGGCTGATCCAGGCTTACAAACTCCAGTACACCAAGAGCCAGGTGTTGCAACATCACCAACCCGACATCCAATCTCAGCACACCAAGTTATGTATGAGTTGCGGATATATTCCCTTGAGGAGGCAACATTTGGATTGGTGCTTGCATCACGGGCAATTAGAGCAGCTCATTGTCTGACATCAATTCAGTTCTCTCCTACATCTGAGCACATACTACTTGCCTATGGTCGACGCCATGGCTCTCTTCTTAAAAGTATTGTCATTGATGGAGACACAACATTACCTATATACACAGTGCTAGAGGTATACAGGGTGTCAGATATGGAACTTGTTAGGGTGCTTCCTAGTGCGGAAGACGAGGTCAATGTGGCATGCTTTCATCCTTTTGCTGGGGGAGGATTAGTTTATGGAACAAAGGAAGGAAAGCTTAGAGTCCTCCAGTATGACGGTGCTCATGCAGTGAATGGCAACGGACCAAGTTACTTTCCTGAAGAGACCATCATTGGAGTCAGTCAGTGA 2412 0.4515 MTGFSRSRDHASSSSHNSNSSGSNVFNLLARREISPRTKYVAKWHWVEASKSKSSPYSRPKNEVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSSDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIQPTEHISLSTELPYVSLPFFFMPSDTLDESRTELQHSSHDVGSGSMQIESSAMVQLQADTSATEQYETTVSPMDTFSEMPTTQTGTEYPTHTSFSNGMGVGLSNLTMDGMETDETRPAEGSQHGNSTNTYSFNGVLHGLSRQTANRGVPSELGQFNQFFPSSSRDPSAWELPFLQGWLMGQSQAGVPSMLPHMGASRDILAQQIGSSTMPSNLSSSNNDAAMPSSAITGSISIPGSSMRSGLRNHFSQSRQPVSESGNLATSINNSHDGSDIQTIMSRIQSELAATSVAAAAAAELPCTVKLRVWSHDIKNPCVPLNADRCRLNIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQEPGVATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGDTTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGNGPSYFPEETIIGVSQ* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0320 803 MobiDBLite consensus disorder prediction 349 377 - -
Vra3g0320 803 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 175 IPR001680 GO:0005515
Vra3g0320 803 ProSitePatterns Trp-Asp (WD) repeats signature. 153 167 IPR019775 -
Vra3g0320 803 SUPERFAMILY WD40 repeat-like 100 241 IPR036322 GO:0005515
Vra3g0320 803 MobiDBLite consensus disorder prediction 349 406 - -
Vra3g0320 803 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 1 802 - -
Vra3g0320 803 Pfam WD domain, G-beta repeat 127 166 IPR001680 GO:0005515
Vra3g0320 803 MobiDBLite consensus disorder prediction 482 541 - -
Vra3g0320 803 SUPERFAMILY WD40 repeat-like 612 779 IPR036322 GO:0005515
Vra3g0320 803 SMART WD40_4 169 206 IPR001680 GO:0005515
Vra3g0320 803 SMART WD40_4 85 123 IPR001680 GO:0005515
Vra3g0320 803 SMART WD40_4 738 778 IPR001680 GO:0005515
Vra3g0320 803 SMART WD40_4 126 166 IPR001680 GO:0005515
Vra3g0320 803 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 1 802 - -
Vra3g0320 803 MobiDBLite consensus disorder prediction 1 22 - -
Vra3g0320 803 Gene3D - 82 255 IPR015943 GO:0005515
Vra3g0320 803 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 171 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0320 100 267 Miscellaneous Gene Families AT5G08390 25.414 2.40e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0320 - K17985 gmx:100817857 1425.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0320 3 3757437 3765493 Vra3g0320 3 3757437 3765493 ECH