Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0312 ATGGAGGAGGAGGGTGACATATACGACGGTGTTAGAGCTCAGTTTCCTCTTTCATTCGGGAAGCAATCGAAGCCTCAAACGCCTCTGGAAGCCATCCACAATGCGACACGTCGTTCAACTTCCACTTCCAATCCCAATTCCAAAACCACCGACCAACTTCCCTCTCTCTCCTCCTCTTCCAGGGAATGGCTCAATTCCCTCCGTCCTTCCAAAAACCCTATCCCACCGCCGCCTGCCGATCACGACGATGCCCCTCTCGTGGGACCCCCTCCGCCTCCGCCCTCAGCTTCCCACGACGACGACGGGGACGGCGACATGATTGGCCCGCCCCCGCCGCCAACCAACGCGTCGGAGTCCGAAGACGATTCGGATGAAGACGAAGTAGGGACCCGCTTCCGGATTCCTCTTAGTAACGAAATTGTTCTCAAGGGCCATACCAAGGTTGTGTCAGCTCTTGCTGTGGATCATACGGGATCAAGAGTGCTTTCTGGAAGCTATGACTATACAGTACGAATGTATGACTTTCAAGGAATGAATGCTCGATTGGAATCTTTTCGTCAGCTGGAGCCATTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCAACTGCTGATCGCTTTTTGTGCGTCACTGGATCAGCTCAAGCGAAGATTTATGACCGAGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGAGACATGTATATTCGTGATTTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAAGATGGCTCACTACGCATATGGGATGTTAATGACTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTCGCAAGACCTGGAAGAGTTCCTGTAACCACATGTGCATGGGATCGTGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGTTCGATCCAGATTTGGAATATTAAGCCTGGTTGGGGGAGTAGGCCAGACCTACACATTGAAAAAGGACATGAAGATGATATTAGTGGTCTGAAATTTTCTAGTGATGGGAGAATCTTATTGTCAAGGAGTTTTGATGGTTCATTGAAGGTTTGGGATCTACGTAAAATAAAAGAACCATTAAAGGTATTTGAGGATCTGCCAAATCACTATGGACAAACAAATATTGCCTTCAGTCCCGATGAGCAACTCTTTTTGACTGGAACATCTGTGGAAAGGGAGAGCTCGACAGGAGGTTTATTGTGCTTCTTCGATAGATTAAACCTTGAGCTTGTTTCAAGAGTCGGCATATCATCCACTTGCAGTGTTGTTCAATGTTATTGGCATCCTAAACTGAATCAGATACTTGCAACTACTGGTGATAAAAGTCAAGGAGGGACTCACGTACTATATGATCCAACCCTAAGTGAGAGAGGAGCTCTTGTATGTGTTGCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCATGCTTTACCACTATTTAGAGATCAGCCAAGCCGAAAGCGACAGCGAGAGAAAGTACTGAAGGATCCATTGAAGTCCCATAAACCTGAATTACCAATTACAGGTCCTGGATTTGGTGGACGAGTTGGTACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTGAAGAAAGGGGGCATGATTAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGCTGCTGCGAAGGATCCAAAATTCATTGCTCCAGCATACGCAGAAACCCAACCTGAGCCAGTTTTTGCCAAGTCAGATTCTGAGGATGAAGATAAATGA 1842 0.4615 MEEEGDIYDGVRAQFPLSFGKQSKPQTPLEAIHNATRRSTSTSNPNSKTTDQLPSLSSSSREWLNSLRPSKNPIPPPPADHDDAPLVGPPPPPPSASHDDDGDGDMIGPPPPPTNASESEDDSDEDEVGTRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNARLESFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWNIKPGWGSRPDLHIEKGHEDDISGLKFSSDGRILLSRSFDGSLKVWDLRKIKEPLKVFEDLPNHYGQTNIAFSPDEQLFLTGTSVERESSTGGLLCFFDRLNLELVSRVGISSTCSVVQCYWHPKLNQILATTGDKSQGGTHVLYDPTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPITGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEPVFAKSDSEDEDK* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0312 613 Pfam WD domain, G-beta repeat 241 276 IPR001680 GO:0005515
Vra3g0312 613 Pfam WD domain, G-beta repeat 298 324 IPR001680 GO:0005515
Vra3g0312 613 Pfam WD domain, G-beta repeat 140 174 IPR001680 GO:0005515
Vra3g0312 613 Pfam WD domain, G-beta repeat 336 370 IPR001680 GO:0005515
Vra3g0312 613 Gene3D - 231 471 IPR015943 GO:0005515
Vra3g0312 613 Gene3D - 96 230 IPR015943 GO:0005515
Vra3g0312 613 ProSitePatterns Trp-Asp (WD) repeats signature. 263 277 IPR019775 -
Vra3g0312 613 MobiDBLite consensus disorder prediction 70 97 - -
Vra3g0312 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 372 IPR001680 GO:0005515
Vra3g0312 613 MobiDBLite consensus disorder prediction 592 613 - -
Vra3g0312 613 MobiDBLite consensus disorder prediction 19 67 - -
Vra3g0312 613 MobiDBLite consensus disorder prediction 510 544 - -
Vra3g0312 613 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
Vra3g0312 613 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vra3g0312 613 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Vra3g0312 613 PRINTS G protein beta WD-40 repeat signature 357 371 IPR020472 -
Vra3g0312 613 SMART WD40_4 184 221 IPR001680 GO:0005515
Vra3g0312 613 SMART WD40_4 135 174 IPR001680 GO:0005515
Vra3g0312 613 SMART WD40_4 280 324 IPR001680 GO:0005515
Vra3g0312 613 SMART WD40_4 233 276 IPR001680 GO:0005515
Vra3g0312 613 SMART WD40_4 331 370 IPR001680 GO:0005515
Vra3g0312 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Vra3g0312 613 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 2 612 - -
Vra3g0312 613 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 372 - -
Vra3g0312 613 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 285 IPR001680 GO:0005515
Vra3g0312 613 MobiDBLite consensus disorder prediction 1 128 - -
Vra3g0312 613 MobiDBLite consensus disorder prediction 510 530 - -
Vra3g0312 613 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 278 - -
Vra3g0312 613 CDD WD40 141 460 - -
Vra3g0312 613 SUPERFAMILY WD40 repeat-like 124 459 IPR036322 GO:0005515
Vra3g0312 613 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 176 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0312 245 443 Miscellaneous Gene Families AT5G08390 25.000 2.67e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0312 K24752 - gmx:100815380 1089.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0312 3 3706824 3710940 Vra3g0312 3 3706824 3710940 ECH