Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0311 ATGGAGGAAGAGGGTAGTGTGAAAGCAGGAAGTAGTCTCCGAGCAGGCAGTACTAGAAGTAGTTTGAGGATTGGGAGTGTATCAGTTTGGGGGAACAGTGGTGTGGAAATTTTTGGCACCTCTTTCCACCAGGAAGATGATGAAGAGGCTCTTAAATGGGCTGCCATTCAGAAACTTCCCACCATGGCACGTTTGAGGACAGGCTTGCTGACTTCACCTCAAGGGGTTGCCAATGAGATTGATGTTCATCAACTGGGCTTGCAAGAAAGGAGAGGTTTGCTTGAAAGACTTGTCAGAGTTGCTGAAGAGGACAATGAGAAGTTCATGCTCAAGCTCAGGGAACGCATTGATAGAGTTGGAATTGCCATTCCTACAATAGAGGTCCGATTTGAGGGCATGAACGTTGGAGCAGAAGTTCATGTTGGTAGTAGAGCTGTGCCAACTCTCACTAACTACATGGTTAACAAAGTGGAGGGGCTACTGAACTTCCTACATCTGCTCCCAAGTAGAAAACAGGATATAAACATTATCCAGGATGTTAGTGGAATAATAAGGCCGGCCAGAATGACATTGCTGTTGGGCCCTCCAAGTTCTGGGAAGACCACTCTCCTGTTGGCCTTGGCTGGAAGACTTGATTCAAAACTTAAGTTCAATGGAAAGGTGACTTATAATGGCCATGGGATAAATGAGTTTGTACCCCAAAAAACTGCTGCTTATGTCAGTCAAAATGATCTTCATATTGGAGAAATGACAGTCCGAGAAACCATGGCCTTTTCAGCACGAGTTCAAGGAGTTGGACCTCGTTATGATTTGCTAACAGAGGTGTCCAGAAGAGAAAAAGAAGCAAATATTACACCTGATCATGATATAGATGTCTATATGAAGGCTGTAGCAACCGAAGGTCAGAAAGCAAATTTTATTACAGATTATATTCTAAGGATTCTTGGACTGGAGGTCTGTGCTGATACTGTTGTGGGAAATGAAATGTTAAGAGGTATATCTGGTGGACAAAGAAAACGTGTTACAACAGGGGAGATTCTGGTTGGACCAGCAAAGGCTCTATTCATGGATGAAATATCTACTGGTTTGGATAGTTCAACAACTTTTCAAGTTGTGAATTCACTCAAGCACTATATCCATTCTCTCAAAGGAACTGCTGTTGTTTCACTCTTACAACCAGCACCAGAGACTTACAATCTTTTTGATGACATTATTCTACTCTCTGATGGGCAAATTGTGTATCAGGGTCCCCGTGAACATGTTCTTGAATTTTTTGCTTCTGTGGGTTTCAAATGTCCTGAGAGGAAAGGTGTTGCAGACTTTTTGCAAGAAGTAACATCAAGGAAAGATCAGGAGCAATATTGGGTACAAAGAGATGAGCCTTACAGATTCGTTACAACCAAAGAGTTTGTAGAGGCATTTCAATCATTTCATGTAGCGAGAAGCCTGGCTAATGAACTTGATACTCAATTTGACAAGTCGAAAAGCCACCCTGCAGCTTTGGCAACCGAAAAGTATGGGTTAGGAAAGTGGGAACTGTTTAAAGCTTGCTTGTCAAGAGAATATTTACTCATGAAGCGTAATTCATTTCTTCACATCTTCGAACTTTGCCGTACTGCTACAGTGGCCTTTATTGCAATGACTGTTCTTTTTCGGACTGAGATTCACCATGATTCAGTGACTGATGGTGGTATATATGTGGGTGCATTGTTCTATATCCTTCTCATAACTTTGATTGATGGGTTTACTGATCTTAGCGTGACAGTTTCTAAGCTTCCGGTTTTTTACAAGCAAAGGGACTTTCTCTTCTTCCCTTCATGGATATATGTTCTTCCTGGATGGATCCTGAAAATCCCCGTGACTTTTGCGCAAGTGGGAATCTGGGTGTTCCTCACCTACTATGTTATTGGTTTTGATCCATATGTTGGAAGACTCTTCAGGCAGTTCCTTCTTCTGTTAATTGTTAGCCAGATGGCTTCATCCTTATTCCGGTTTATAGGAGCACTTGGTAGGGATCTGACAGTAGGTTTCACCATTGGATCATATGTATTGTCCATTCTCATTGCTATGAGTGGCTTCGTCTTGTCAAAAGACAATGTGAAAAAATGGTGGCTATGGGGCTTTTGGTCTTCACCTATGATGTATGGACAAAATGCCCTAGTAAATAATGAGTTCCTAGGGAACAGATGGGGACATGTTCTACCCAACTCAACCACTCCATTAGGAATTGAAGTTCTGAAATCTCGCGGGTTCTTCACTGAGCCGAAATGGTATTGGATTGGTGTTGGGGCAGTGTTTGGATATGCGATAGTGTTCAATGTCGCTTACATACTTGCTCTCACTTACTTGAACCCAATAGTGCAGCATCAAGTTGTTAAATCAGAGGAATCTCAAAGCAATCCACAGAATGGTGGAAGCATTTCTACTAGTTCTTCATCCAGAAGAAAAGAAGCTGAGAGAAGAGGAATGGTTCTTCCGTTTGAATCATATTCCATCACCTTTGATGATGTAACATATTCTGTTGACATGCCACAGGAAATGAAGAATCAGGGTGTTCTTGAGGATAGGTTGGAGCTTTTGAAGGGTGTCAGTGGCGCTTTCAGACCAGGAGTTCTCACAGCATTAATGGGTTCCACTGGTGCTGGCAAAACAACTCTGATGGATGTACTAGCTGGAAGAAAGACCGGGGGTTATATTGGTGGGAACATCACAATTTCTGGCTATCCAAAGAAGCAAGAAACCTTTGCAAGAATTTCTGGATACTGTGAACAAAATGATATCCACTCTCCCCATGTCACAGTATATGAATCTTTGCTCTATTCAGCATGGCTTCGATTATCAGCAGAAATCAATTCAGAAACCAGGAAGATGTTCATTGAGGAAGTCATTGGACTTGTGGAGCTGAACTCTCTAAAGCATGCAATTGTTGGATTGCCAGGTGTTAACGGTCTATCAACCGAGCAACGCAAAAGATTGACTATTGCTGTTGAGCTAGTAGCTAATCCTTCTATCATATTCATGGATGAGCCAACTTCTGGGCTAGATGCAAGAGCTGCTGCTATTGTCATAAGAGCAGTTAGAAACATAGTGGACACTGGAAGAACAGTTGTCTGCACAATCCATCAGCCTAGCATTGATATATTTGAATCTTTTGATGAGCTTTTTCTTATGAAGAGAGGAGGGCAAGAAATATACGTGGGGCCACTTGGACATCATTCTTCTCATTTAATCAGTTACTTTGAGGAAATTAAAGGGGTCAATAGGATTGAGGATGGCTACAATCCAGCAACGTGGATGTTGGAAGTCACAACTTCAGCAGCAGAAATGGAATTGGGGATTGATTTTGCTGAAGTGTATAAAAATTCAGAGTTATACAGGAAAAACAAGGAAATGATCAAAGAATTAAGTACTCCATCCACTGGTTCAAAGGACCTTCATTTTCCTACAAAGTACTCAAGGTCCATCATTACTCAATGCATGGCTTGCTTATGGAAACAACATTTGTCTTACTGGCGCAATAATCAATACACTGCCCAAAGAATTCTCTACACAATCGCTCTGGCCTTGTTGTTTGGGAGCATTTATTGGGACCTTGGCTCCAAAATAAAAAAGCAACAAGATCTTTTCAATGCCATGGGATCCATGTATACTGCTGTTCTCCTTCTTGGTGTTAAGAATGCTTTTTCATCACAACCGTTGGTGGCTGTTGAAAGAACTGTTTTTTATAGGGAAAAAGCTGCTGGAATGTATTCGGCTTTGGCATATGCTTTTGCTCAGGTTGTAATCGAACTTCCTCATGTTCTTGTACAAAGTGTGATTTATAGCCTTATAGTGTACGCAATGATCGGTTTTGAGTGGACTGTAGCTAAATTTTTCTGGTACCTTTTCTTCATGTACCTCACCTTCCTCTACTTTACCTATTATGGCATGATGTCTGCTGCATTGACCCCAAACCCCACCATTGCGATTATATTTTCTACTGGAATCTATGAAGTGTGGAATCTCTTCGCAGGATTCATAGTCCCACGGCCAAGGATTCCTGTCTGGTGGAGATGGTACTATTGGGGAAATCCAGTAGCTTGGTCTTTGTATGGGTTGGTGGCATCACAGTATGGAGATATTCAAGGAACTATTGACTTTAGTGGTAAAAGTACAACAGTGGAAGACTTTTTGAGAAAGTACTTTGGTTTTAGGCATGATTTTTTGGGAGTGGTTTCAGCTGTACTGATAGTATTTTCAGTAACTTTTGCATGCATCTTTGCCATTGCCATTAAGTTGCTTAATTTCCAAAGACGTTAA 4299 0.4152 MEEEGSVKAGSSLRAGSTRSSLRIGSVSVWGNSGVEIFGTSFHQEDDEEALKWAAIQKLPTMARLRTGLLTSPQGVANEIDVHQLGLQERRGLLERLVRVAEEDNEKFMLKLRERIDRVGIAIPTIEVRFEGMNVGAEVHVGSRAVPTLTNYMVNKVEGLLNFLHLLPSRKQDINIIQDVSGIIRPARMTLLLGPPSSGKTTLLLALAGRLDSKLKFNGKVTYNGHGINEFVPQKTAAYVSQNDLHIGEMTVRETMAFSARVQGVGPRYDLLTEVSRREKEANITPDHDIDVYMKAVATEGQKANFITDYILRILGLEVCADTVVGNEMLRGISGGQRKRVTTGEILVGPAKALFMDEISTGLDSSTTFQVVNSLKHYIHSLKGTAVVSLLQPAPETYNLFDDIILLSDGQIVYQGPREHVLEFFASVGFKCPERKGVADFLQEVTSRKDQEQYWVQRDEPYRFVTTKEFVEAFQSFHVARSLANELDTQFDKSKSHPAALATEKYGLGKWELFKACLSREYLLMKRNSFLHIFELCRTATVAFIAMTVLFRTEIHHDSVTDGGIYVGALFYILLITLIDGFTDLSVTVSKLPVFYKQRDFLFFPSWIYVLPGWILKIPVTFAQVGIWVFLTYYVIGFDPYVGRLFRQFLLLLIVSQMASSLFRFIGALGRDLTVGFTIGSYVLSILIAMSGFVLSKDNVKKWWLWGFWSSPMMYGQNALVNNEFLGNRWGHVLPNSTTPLGIEVLKSRGFFTEPKWYWIGVGAVFGYAIVFNVAYILALTYLNPIVQHQVVKSEESQSNPQNGGSISTSSSSRRKEAERRGMVLPFESYSITFDDVTYSVDMPQEMKNQGVLEDRLELLKGVSGAFRPGVLTALMGSTGAGKTTLMDVLAGRKTGGYIGGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLSAEINSETRKMFIEEVIGLVELNSLKHAIVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVIRAVRNIVDTGRTVVCTIHQPSIDIFESFDELFLMKRGGQEIYVGPLGHHSSHLISYFEEIKGVNRIEDGYNPATWMLEVTTSAAEMELGIDFAEVYKNSELYRKNKEMIKELSTPSTGSKDLHFPTKYSRSIITQCMACLWKQHLSYWRNNQYTAQRILYTIALALLFGSIYWDLGSKIKKQQDLFNAMGSMYTAVLLLGVKNAFSSQPLVAVERTVFYREKAAGMYSALAYAFAQVVIELPHVLVQSVIYSLIVYAMIGFEWTVAKFFWYLFFMYLTFLYFTYYGMMSAALTPNPTIAIIFSTGIYEVWNLFAGFIVPRPRIPVWWRWYYWGNPVAWSLYGLVASQYGDIQGTIDFSGKSTTVEDFLRKYFGFRHDFLGVVSAVLIVFSVTFACIFAIAIKLLNFQRR* 1433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0311 1432 Pfam ABC-2 type transporter 392 492 IPR043926 GO:0140359
Vra3g0311 1432 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 832 1084 IPR003439 GO:0005524
Vra3g0311 1432 CDD ABCG_PDR_domain2 831 1067 IPR034003 -
Vra3g0311 1432 MobiDBLite consensus disorder prediction 794 812 - -
Vra3g0311 1432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 433 IPR027417 -
Vra3g0311 1432 CDD ABCG_PDR_domain1 166 416 IPR034001 -
Vra3g0311 1432 PANTHER ATP-BINDING CASSETTE TRANSPORTER 21 1432 - -
Vra3g0311 1432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 848 1069 IPR027417 -
Vra3g0311 1432 SMART AAA_5 186 418 IPR003593 -
Vra3g0311 1432 SMART AAA_5 869 1061 IPR003593 -
Vra3g0311 1432 Pfam ABC-transporter N-terminal 101 151 IPR029481 -
Vra3g0311 1432 Pfam ABC transporter 178 359 IPR003439 GO:0005524
Vra3g0311 1432 Pfam ABC transporter 860 1012 IPR003439 GO:0005524
Vra3g0311 1432 Gene3D - 165 473 IPR027417 -
Vra3g0311 1432 Gene3D - 832 1077 IPR027417 -
Vra3g0311 1432 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 21 1432 - -
Vra3g0311 1432 MobiDBLite consensus disorder prediction 794 818 - -
Vra3g0311 1432 Pfam Plant PDR ABC transporter associated 730 792 IPR013581 -
Vra3g0311 1432 Pfam ABC-2 type transporter 1157 1371 IPR013525 GO:0016020|GO:0140359
Vra3g0311 1432 Pfam ABC-2 type transporter 513 725 IPR013525 GO:0016020|GO:0140359
Vra3g0311 1432 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 161 434 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0311 Vra-Chr3 3695637 3703315 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0311 K08711 - gmx:100813417 2486.06