Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0309 ATGGAAGAGAATGATGCATTGAGGGCCATGGACGCTGAGCAACTGAGAGAGCACGCTCATAAGATGGTCGATTTCATTGCTGATTACTACAAAACCATTCAAAACTTCCCCGTTCTAAGCCAAGTCCAGCCAGGTTATCTGGGGAAGCTTTTACCAGATTCTGCTCCCGAGTATCCTGAGTCCTTGCAAAATGTGTTGGACGATGTAAAGGAGAAAATACTCCCAGGGGTGACGCATTGGCAAAGTCCGAATTATTTTGCGTATTTTCCTTCCAACAGTAGCATTGCTGGATTTCTTGGAGAGATGCTCAGTGCGGGACTTAACATTGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCCACTGAACTTGAAAGCATTGTTCTTGACTGGCTGGCTAAGGCGTTCCAGTTGCCTGAAGATTTCTATTCTAGCGGAAAAGGTGGTGGAGTTATACAGGGAACAGCAAGTGAAGCTGTACTAGTTGTCCTATTAGCTGCACGTGACAAGATCTTAAGAAGGCTTGGAAGGAGTGCCCTTCCTAAGCTTGTGATGTATGCATCTGATCAAACACACTCTGCTTTACGAAAAGCTTGTCAGATAGCAGGACTTAATCCAGAGCTTTGCAAGTTGCTTAAAGCTGATTCTGCAACAAATTATGCACTCTCTCCTGAAGTACTTTCTGAAGCAATTTCAAATGACATTGCTGGCGGTCTTGTACCCTTTTTCTTATGTGCTACTGTTGGCACCACTTCGTCAACAGCTATTGATCCCCTGCCTGCATTGGGAAAAATTGCCAAGACCAACAATCTTTGGTTTCACGTGGATGCTGCTTATGCTGGCAGTGCTTGTATATGTCCAGAGTACCGCCACTGCTTTGACGGTATTGAAGAAAGTGACTCATTTAACATGAATGCACATAAATGGTTCCTCACCAACTTTGACTGTTCAGTACTATGGGTTAAGGACAGAAGTTCTCTGATTCAATCACTGTCTACAAATCCTGAATTTCTGAAAAACAAGGCCTCTCAAGGAAACCTGGTCATAGATTACAAAGATTGGCAAATTCCTCTTGGTCGTCGCTTTAGATCATTAAAATTGTGGATGGTGTTGCGACTTTATGGTTTGGAAGGTCTGCGAAGTCACGTAAGAAACCACATTGAGTTAGCTGCTTATTTTGAAGAGCTTGTTAGTCAGGACACAAGATTCAAGGTCGTTGTACCTCGTACATTCTCCTTAGTTTGCTTTCGGCTATTGCCCCCTCTCAATTCTGAAGATCATGGTAATAAACTAAATAGCGATCTACTCGACTCAGTAAATTCAACAGGAAATATTTTCATATCACACACGGTTCTATCAGGTGAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACAGAAAGGAGGCATGTCACTACTGCGTGGCAGATTTTTCAAGAGAAAGCCACTGCTCTACTTGAGAGTTTACAGGATTAA 1476 0.4316 MEENDALRAMDAEQLREHAHKMVDFIADYYKTIQNFPVLSQVQPGYLGKLLPDSAPEYPESLQNVLDDVKEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELESIVLDWLAKAFQLPEDFYSSGKGGGVIQGTASEAVLVVLLAARDKILRRLGRSALPKLVMYASDQTHSALRKACQIAGLNPELCKLLKADSATNYALSPEVLSEAISNDIAGGLVPFFLCATVGTTSSTAIDPLPALGKIAKTNNLWFHVDAAYAGSACICPEYRHCFDGIEESDSFNMNAHKWFLTNFDCSVLWVKDRSSLIQSLSTNPEFLKNKASQGNLVIDYKDWQIPLGRRFRSLKLWMVLRLYGLEGLRSHVRNHIELAAYFEELVSQDTRFKVVVPRTFSLVCFRLLPPLNSEDHGNKLNSDLLDSVNSTGNIFISHTVLSGEYILRFAVGAPLTERRHVTTAWQIFQEKATALLESLQD* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0309 491 CDD DOPA_deC_like 85 476 - -
Vra3g0309 491 PANTHER BNAA07G00240D PROTEIN 10 488 - -
Vra3g0309 491 SUPERFAMILY PLP-dependent transferases 10 483 IPR015424 -
Vra3g0309 491 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 300 321 IPR021115 GO:0016831
Vra3g0309 491 Gene3D Aspartate Aminotransferase, domain 1 384 491 IPR015422 GO:0003824
Vra3g0309 491 Gene3D - 5 90 - -
Vra3g0309 491 Pfam Pyridoxal-dependent decarboxylase conserved domain 44 417 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vra3g0309 491 PRINTS Aromatic-L-amino-acid decarboxylase signature 15 34 IPR010977 GO:0006520|GO:0016831
Vra3g0309 491 PRINTS Aromatic-L-amino-acid decarboxylase signature 38 55 IPR010977 GO:0006520|GO:0016831
Vra3g0309 491 PRINTS Aromatic-L-amino-acid decarboxylase signature 56 75 IPR010977 GO:0006520|GO:0016831
Vra3g0309 491 PRINTS Aromatic-L-amino-acid decarboxylase signature 82 101 IPR010977 GO:0006520|GO:0016831
Vra3g0309 491 PRINTS Aromatic-L-amino-acid decarboxylase signature 103 121 IPR010977 GO:0006520|GO:0016831
Vra3g0309 491 PRINTS Aromatic-L-amino-acid decarboxylase signature 122 141 IPR010977 GO:0006520|GO:0016831
Vra3g0309 491 PRINTS Aromatic-L-amino-acid decarboxylase signature 147 167 IPR010977 GO:0006520|GO:0016831
Vra3g0309 491 PRINTS Aromatic-L-amino-acid decarboxylase signature 356 371 IPR010977 GO:0006520|GO:0016831
Vra3g0309 491 PRINTS Aromatic-L-amino-acid decarboxylase signature 399 418 IPR010977 GO:0006520|GO:0016831
Vra3g0309 491 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 10 488 - -
Vra3g0309 491 Gene3D - 91 383 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0309 Vra-Chr3 3651214 3658033 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0309 K01593 - gmx:100791074 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0309 3 3651214 3658033 Vra3g0309 3 3651214 3658033 ECH