Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0305 ATGATACTTCTCTCTTCCATTTATAATCACAATTCATCAATGGCAGCTTCTTTCCATTCCCTCACATTCTTCTCCTCACTTTCATCTTCAGTCCCACCTATGATTTTTCGTCACAGTAGCACACACTCTTCATTCAATGGCCAATCTGTGAACCTGCCACGTTTGAGGTTATCCAAGCTAAAGCAAAATCCTCCGAAACACTTGCCTGCCATGATGATGGCCAAACCAACCATACAGTTCATTAGGGGAACTGATGAACAGACAATACCAGATGTGAAGCTAACTACATCACGTGATGGAACAAATGGTATGGCCATCTTCAACTTTGATCAACCCTCAGTTTTTGATTCATCTCGTGAAGTTGCTGATATCACTGGTTTATACATGATTGATGAGGAAGGGGTTCTTCAGTCTGTGGATGTGAGTGCTAAGTTTGTCAATGGAAAGCCCTCAGGAATTGAAGCCAAGTATGTGATGCGGACTCCAAAGGATTGGGACAGATTCATGAGATTTATGGAACGATATTCTGATGCAAAGGGTTTGCAGTTCATTAAAAAATAA 561 0.4118 MILLSSIYNHNSSMAASFHSLTFFSSLSSSVPPMIFRHSSTHSSFNGQSVNLPRLRLSKLKQNPPKHLPAMMMAKPTIQFIRGTDEQTIPDVKLTTSRDGTNGMAIFNFDQPSVFDSSREVADITGLYMIDEEGVLQSVDVSAKFVNGKPSGIEAKYVMRTPKDWDRFMRFMERYSDAKGLQFIKK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0305 186 Hamap Photosystem II reaction center Psb28 protein [psb28]. 75 184 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Vra3g0305 186 Pfam Psb28 protein 78 183 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Vra3g0305 186 TIGRFAM PS_II_psb28: photosystem II reaction center protein Psb28 78 184 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Vra3g0305 186 Gene3D Photosystem II Psb28 73 186 IPR038676 -
Vra3g0305 186 PANTHER - 11 186 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0305 Vra-Chr3 3601827 3602845 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0305 K08903 - gmx:100306491 249.21