Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0303 ATGGAAAATGCACTTTCTCTTCACAGATCCCAAACCCCACTTATGGGTTCTTCATCTCCTGGGAACCTTTCTTCTTTGGGGCGTTGCTTTGCCTCAAAGGAAAGAGATCGGTGTCACCTGTTTTCCTGGATATGTTGTTCCTCCATGGAACGAAGGCTGAGACCAAAACCAAAGAAAGGGGGCCATGTTGAAAGACAAGTCACAGTTTTGGAGGATACCCCGATCTGGAAACCGTCCTCTTCTGCGATTTGTCGTCAGATAGAGCAGTTGGTTTTGTGTAATAGGTACCGGGAGGCAATGGAGTTGTTTGAAATTTTGGAAGTTGGACATAATGGTTTTGATGTGGGTGGTAGCACCTATGATGCTTTGGTGAGTGCTTGTGTCGGTTTGAGATCGATTAGAGATGTTAAGAGGGTGTATAATTATATGATCAACAGTGAGTTTGAGCCTGATTTGTTTGTGATGAATAGGATATTGTTTATGCATGTCAGATGTGGTCTCATGCTCGATGCACGAAAGCTGTTTGAGGAAATGCCTGAGAGAGATTCGGCTTCGTGGATGACCATGATTGGTGGACTTGTAGACTCTGGGGATTTCTCTGAAGCTTTTAGGTTGTTTCTGTGTATGTGGGAAGAGATTAATGACGGAGGATCTCGCACGTTTGTCACCATGATTCGGGCATCGGCTGGATTGGGTCTTGTTCAAGTTGGAAGGCAAATTCATGCATGTGCTTTGAAAAGAGGGGTCGGTAATGATAATTTTGTGTCTTGTACACTGATTGACATGTACAGTAAGTGTGGTAGCATCGACGATGCTCATTGTGTATTTGATCAAATGCCAGAGAAGACAACTGTAGGATGGAATTCCATTATTGCTAGCTATGCTCTTCATGGTTATAGTGAGGAAGCTCTTAGTTTATACTATGGCATGCGAGATAGCGGAGCTACAATAGATCACTTTACTATTTCAATTGTGATAAGAATTTGTGCGAGATTGGCGTCATTGGAACATGCAAAACAAGCTCATGCTGCTTTAGTTCGCCATGGTTATGGCACTGATATAGTGGCAAACACTGCACTTATTGACTTCTATAGCAAATGGGGTAGGATGCAGGATGCCCAGCATGTTTTCAACAGGATGCGCTGCAAGAATGTCATATCTTGGAACGCATTGATTGGCGGATATGGTAACCACGGTCAAGGAGAAGAGGCTGTAAAAATGTTCGAGCGGATGCTTCAAGAAGGGATGATTCCTAACCATATCACTTTCCTTGCTGTCTTATCTGCGTGTAGCTATTCAGGTTTATCAGAAAGAGGTTGGGAGATTTTTTACTCTATGAGCAGAGATCACAAGGTTAAGCCCAGAGCAATGCATTATGCATGTATGATTGAACTATTAGGTCGGGAGGGCTTATTAGACGAGGCTTATGCACTAATAAGAAGTGCTCCTTTCAAGCCAACGACAAACATGTGGGCAGCATTGTTGACAGCTTGCAGAATGAACGAGAATCTACAGCTGGGGAAGTTGGCTGCTGAAAAGCTTTACGGGATGGAGCCGGAGAAGCTGTGTAATTATGTAGTACTTCTGAACCTATACAACAGTTCTGGTAAATTGAAGGAAGCTGCAGGTGTTTTACAGACCTTAAAGAGGAAGGGTTTAAGAATGCTTTCAGCATGTAGCTGGATTGAAGTCAAGAAACAACCTTATGTCTTCCTTTGTGGAGACAAATCTCACTCCCAAACAAAGGAAATTTATGATAAGGTAGACAGCCTGATGGTTGAAATATCTAGGTATGGTTATGCTGTGGAGAATGAAACTTTGCTTCCTGATGTGGATGAAGAGGAGCAGCGTATACTAAAATACCACAGTGAAAAGCTGGCTATAGCTTTTGGACTTATCAACACTCCATACTGGACACCTTTGCAAATCACTCAGGGCCATCGTGTGTGTGGTGATTGTCATAATGCAATTAAACTTATAGCCAAGGTTACAGGGCGGGAAATAGTGATAAGAGATGCTAGTAGATTTCACCATTTTAGAAACGGTAGTTGTTCATGTGGCGATTATTGGTGA 2073 0.4279 MENALSLHRSQTPLMGSSSPGNLSSLGRCFASKERDRCHLFSWICCSSMERRLRPKPKKGGHVERQVTVLEDTPIWKPSSSAICRQIEQLVLCNRYREAMELFEILEVGHNGFDVGGSTYDALVSACVGLRSIRDVKRVYNYMINSEFEPDLFVMNRILFMHVRCGLMLDARKLFEEMPERDSASWMTMIGGLVDSGDFSEAFRLFLCMWEEINDGGSRTFVTMIRASAGLGLVQVGRQIHACALKRGVGNDNFVSCTLIDMYSKCGSIDDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYYGMRDSGATIDHFTISIVIRICARLASLEHAKQAHAALVRHGYGTDIVANTALIDFYSKWGRMQDAQHVFNRMRCKNVISWNALIGGYGNHGQGEEAVKMFERMLQEGMIPNHITFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMIELLGREGLLDEAYALIRSAPFKPTTNMWAALLTACRMNENLQLGKLAAEKLYGMEPEKLCNYVVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLSACSWIEVKKQPYVFLCGDKSHSQTKEIYDKVDSLMVEISRYGYAVENETLLPDVDEEEQRILKYHSEKLAIAFGLINTPYWTPLQITQGHRVCGDCHNAIKLIAKVTGREIVIRDASRFHHFRNGSCSCGDYW* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0303 690 PANTHER - 33 684 - -
Vra3g0303 690 Pfam DYW family of nucleic acid deaminases 599 690 IPR032867 GO:0008270
Vra3g0303 690 Gene3D Tetratricopeptide repeat domain 214 341 IPR011990 GO:0005515
Vra3g0303 690 Gene3D Tetratricopeptide repeat domain 81 213 IPR011990 GO:0005515
Vra3g0303 690 Gene3D Tetratricopeptide repeat domain 407 607 IPR011990 GO:0005515
Vra3g0303 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 282 IPR002885 -
Vra3g0303 690 TIGRFAM PPR: pentatricopeptide repeat domain 257 281 IPR002885 -
Vra3g0303 690 TIGRFAM PPR: pentatricopeptide repeat domain 386 419 IPR002885 -
Vra3g0303 690 TIGRFAM PPR: pentatricopeptide repeat domain 287 315 IPR002885 -
Vra3g0303 690 TIGRFAM PPR: pentatricopeptide repeat domain 119 151 IPR002885 -
Vra3g0303 690 Gene3D Tetratricopeptide repeat domain 342 406 IPR011990 GO:0005515
Vra3g0303 690 Pfam PPR repeat family 283 330 IPR002885 -
Vra3g0303 690 Pfam PPR repeat family 383 430 IPR002885 -
Vra3g0303 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 212 IPR002885 -
Vra3g0303 690 Pfam E motif 503 563 IPR046848 -
Vra3g0303 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Vra3g0303 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Vra3g0303 690 MobiDBLite consensus disorder prediction 1 21 - -
Vra3g0303 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Vra3g0303 690 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 33 684 - -
Vra3g0303 690 Pfam PPR repeat 459 479 IPR002885 -
Vra3g0303 690 Pfam PPR repeat 258 282 IPR002885 -
Vra3g0303 690 Pfam PPR repeat 156 181 IPR002885 -
Vra3g0303 690 Pfam PPR repeat 185 211 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0303 Vra-Chr3 3589883 3592389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0303 97 690 Glycoside Hydrolase AT3G49170 36.093 1.50e-131 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0303 - - gmx:100784842 1200.65