Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0301 ATGCTGCTAAGAAGCTCTTCAACGCCAGTTCTTGGATCCCTCCTTTCCAACTTCACAGATAGTCCTAACAACAGTATTCACTCAGAAAGCAGCCATGCAATTAAGCACTTTCCACCAACCAGCGTTCCCCAACATTATCACAGACTTCATGTCCCCCAAACTGGGTCCTTCACTCTCCCTTCCTTCTCATGTGGTTCTTCCCCGATCTCTCCCTCAATTGGTGAGCTTGAAAGGCAAAACAAAGGCTTTAGAAGAGTTCAATCTGATGGGAACTTGCAAGACTTAGCCTACTCCTGCAACAACGAAGACATATTGGAATTTTCAGACCCTTCAAAGAGGTTTCCAACGAGGAACAGATGCTTGGTGCTGGAGACAATTCCTTCTTTCTCGCTTGGTAAGCGCAACGGCTTGCGTCTAGAAGAGGAAGATGAAGAAATGGAAAGTGAGAGTGAAGAAGGGGAGGAGAAGGGGGGAGAGGGGTTGAGTGTGGTGAATGGTGTGATATTGAGTGAAGCTTGGAAAGCGAAAGATGGTGTTTGCAGAGTGAGTTTTGGTGAGCAGGAAGAGGTTGGTAGTGGTAAAGAAATGTATCTTGCAAAGGGGCTTGGGGTAGAGTGCTGCGGGGATGGCATAGGTGGCTGCATAGGGGGTGGTGGAGGTAGTAGTGATCACAATCCTTTGGATTCTGGAGGGAATGACGGCGATAGGCATGAGGTGGAGGAGTATTACAAGAAAATGGTGAAAGAAAATCCAGGGGATCCTTTGTTTCTGAGGAATTATGCTAATTTTTTGTATCAGTGCAAACAGGATCGTGAAGGAGCAGAGGAGTATTATTCCCGTGCCATACTGGCAGACCCAAATGATGGAGATGTTCTATCACAGTATGGGAAGCTGGTTTGGGAGGTACATCATGACCAAGAACGTGCATCCAGCTATTTTGAAAGAGCAGTTCAAGCCTCTCCTGAAGACAGCCATGTACATGCAGCATATGCTAGTTTCCTTTGGGACGCAGAGGAAGAGGAAGATGGTAACAATGAAGCACAGTGTTTGCCGCCTCATTCTCATCAAGGAGCTATGGCTACCGCAGGTGCTTGA 1095 0.4712 MLLRSSSTPVLGSLLSNFTDSPNNSIHSESSHAIKHFPPTSVPQHYHRLHVPQTGSFTLPSFSCGSSPISPSIGELERQNKGFRRVQSDGNLQDLAYSCNNEDILEFSDPSKRFPTRNRCLVLETIPSFSLGKRNGLRLEEEDEEMESESEEGEEKGGEGLSVVNGVILSEAWKAKDGVCRVSFGEQEEVGSGKEMYLAKGLGVECCGDGIGGCIGGGGGSSDHNPLDSGGNDGDRHEVEEYYKKMVKENPGDPLFLRNYANFLYQCKQDREGAEEYYSRAILADPNDGDVLSQYGKLVWEVHHDQERASSYFERAVQASPEDSHVHAAYASFLWDAEEEEDGNNEAQCLPPHSHQGAMATAGA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0301 364 SMART hat_new_1 234 266 IPR003107 GO:0006396
Vra3g0301 364 SMART hat_new_1 269 301 IPR003107 GO:0006396
Vra3g0301 364 SMART hat_new_1 304 336 IPR003107 GO:0006396
Vra3g0301 364 SUPERFAMILY TPR-like 234 341 IPR011990 GO:0005515
Vra3g0301 364 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 348 - -
Vra3g0301 364 MobiDBLite consensus disorder prediction 134 159 - -
Vra3g0301 364 MobiDBLite consensus disorder prediction 341 364 - -
Vra3g0301 364 Gene3D Tetratricopeptide repeat domain 231 348 IPR011990 GO:0005515
Vra3g0301 364 PANTHER OSJNBA0004N05.2 PROTEIN 1 348 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0301 - - gmx:100788436 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0301 3 3568480 3570989 Vra3g0301 3 3568480 3570989 ECH