Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0300 ATGGCGTCGTCTTATCCTGGTTCCGTTAGTGCCACACAGGTTGGCTCCTACTTCGTCGGACAGTACTATCAGATTCTCCGCCAACAGCCGAATCTTGTTCACCAGTTTTACTCTGATTCCAGCAGCATGATTCGTGTCGATGGAGATTCCGTTGAAACTGCGCAAGATGTGTTGCAAATTCATTCAATTGTGTCGTTACTGAGTTTCACTTCAATTGAGATCAAGACCATCAATTCTCTCGACTCTTGGGATGGAGGTGTGATTGTCATGGTCTCAGGTTCTGTGAAGCTAAAGGATATAACCGGGAGGCGGAAGTTCGTTCAAACCTTCTTTCTTGCTCCTCAAGAGAAGGGTTACTTTGTTCTGAATGATATTTTTCATTTTGTTGAAGAAGGTGTTACATACCCAAATATGATACCAGTGGCATCTGAAATTGACAATCAACCGCATGTGTCTGCATCTCTTGCAGAGCCACCAGTAGCTTCAGACTACGGTTTGGAGGAAGAAGCTAGGGAATATGTAAACTCAGTTCATATTGACGATGATCCAGTGGACAAATATAGTCTTCCTGAGCACCAGCAGCAGCTACATGAAGATCTTGAAACCGAAATTGTTGTGGAGGAAACTTCTGCACAGGAGGCATCTCCACCAATTCACAATGTTGTGCATACTGTTCAAGAAACCCCTGCAGCTCTTGTAGAAGAGTCTTTTGAAGAGCCTCCTAAGAAAACTTACGCATCTATTATGATGGAGGAAAACAGTAAAAGGAGGGAAAAATTTAAGTTACGAGTCGCCAAAGGTCAGCCCGTGTTATCAGCTGCTCCTCAGCATGTTCCACAATACACCTTTAAAAGTGCCCCACCTCCTTCAGAGTTGAACCATGTAGCACAGCCAGCAATTCAGCAGTCGAGCCCTGTATCTGTGTATGTCCCTGAGTCAGGATCTGAGCCTGCAGATGAAGGCTATGGACTAGAAGATGAAGGTGAAGTAACCTCTGTCTATGTGAGAAACTTACCTGCTAACGTTACTGAAGCAGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTTCGAAAGGAAATTGGAGTGTGCTATGCATTTGTGGAATTTGAAGATATCATTGGTGTTCAAAATGCGCTTCAGGCTTCTCCAATTCAGTTAGCTGGAAGACAGGTATACATAGAAGAGCGAAGGCCAAACAGTGGCAGTGCAGTTCGAGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGCAAGGAACATGGGAAGGGGAAGTAATCTGGATAATTCAGACTACTCCAGACTAAGAGGCGATGGTTATCTTCAACGTAGTTCACGATGA 1398 0.4449 MASSYPGSVSATQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAQDVLQIHSIVSLLSFTSIEIKTINSLDSWDGGVIVMVSGSVKLKDITGRRKFVQTFFLAPQEKGYFVLNDIFHFVEEGVTYPNMIPVASEIDNQPHVSASLAEPPVASDYGLEEEAREYVNSVHIDDDPVDKYSLPEHQQQLHEDLETEIVVEETSAQEASPPIHNVVHTVQETPAALVEESFEEPPKKTYASIMMEENSKRREKFKLRVAKGQPVLSAAPQHVPQYTFKSAPPPSELNHVAQPAIQQSSPVSVYVPESGSEPADEGYGLEDEGEVTSVYVRNLPANVTEAEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSGSAVRGGRRGRGRGSYQADAPRGRFGARNMGRGSNLDNSDYSRLRGDGYLQRSSR* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0300 465 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 459 IPR039539 -
Vra3g0300 465 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Vra3g0300 465 PANTHER GB|AAD20086.1 9 459 - -
Vra3g0300 465 SUPERFAMILY RNA-binding domain, RBD 328 436 IPR035979 GO:0003676
Vra3g0300 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 333 396 IPR000504 GO:0003723
Vra3g0300 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 331 408 IPR000504 GO:0003723
Vra3g0300 465 MobiDBLite consensus disorder prediction 407 465 - -
Vra3g0300 465 Gene3D - 5 132 - -
Vra3g0300 465 CDD RRM_SF 333 404 - -
Vra3g0300 465 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Vra3g0300 465 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Vra3g0300 465 SMART rrm1_1 332 404 IPR000504 GO:0003723
Vra3g0300 465 CDD NTF2 10 130 IPR018222 -
Vra3g0300 465 Gene3D - 316 445 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0300 Vra-Chr3 3560658 3566423 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0300 - - gmx:100787900 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0300 3 3560658 3566423 Vra3g0300 3 3560658 3566423 ECH