Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0299 ATGGCTGATAGTGAATCCGTTGCTACCGAAGCATCCGCTCATTCCGCTGCTGATGCATATGCTTCGGCTGGTTATGCCGAGTCTGGTTCAAATCCTGCTATCGAGGCAGGTGCTACTACTGATCAACCGGCTGGAGAAGGAGGTCAGTCCACTTCAACGTATGGATTTGGTTATTCTAATACTGGTGATGTGAATGCGTATACTGGGGATCCGAATTCTGTTCTACAACAATCCCAATTCAATGCAACTGGTGATACCAAGCCAGCTGGTGGAGTGCCGGATGCGAACGAGGCCTCTGCTGGGGTTGGAAGCACTGCTGCTGAGCCTGCTCTGACTTCTAACTACAGTTCATCTGTCAATGGCTCAGTGACGAACGCTGCCGGACTTGAAAACGGAAATGCATTGGAAAACGTTGACGGGTCAGCTGATGAAAAACAACTCGCAGATGGCTACGGAGCTGCCTTGTCTGCTGAGGAAGATCGACTGTGGAATATTGTAAGAGCTAATTCTTTAGATTTCAGTGCCTGGACTTCCTTGATTGAAGAGACAGAGAAGGTAGCCGAGGACAATATTCTGAAGATTCGAAGAGTTTATGATTCCTTTCTGGCAGAATTTCCCTTGTGCTATGGTTATTGGAAGAAATATGCTGACCATGAGGCACGACTTGGCACTATTGATAAAGTTGTTGAGGTGTATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATTTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCCGACACTGTTCGTAGAATGCGTTCAACAGTGATATCTCCCTTGTATGGCGGAAAAGCTTTGATGGGATTTCATGCCAGAATGCTTTTCGAACGAGGATTGGCTTATGTTGGAACAGATTATCTTTCTTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCTCGCCTTGCCATAATTTACACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGCTTCAAAGAGTTAGCTGGAAACCGACCTTTGTCAGAGTTACGAACTGCTGAAGAAGCTGCTGTAAGTGTTGCTTCAGAGGCTACCGGACAAGGTTCTGAGGGAGAGGTTCATCCTGATGGTGCAGAGAAGTCTCCTAAATCTGTAAGTGCTGGCTTAACAGAAGCAGAAGAGTTGGAGAAGTATATCGCCATAAGAGAAGAGATCTATAAAAAAGCTAAAGAGTTCGATTCTAAGATCTTTGGTTTTGAAACAGCCATCCGAAGGCCCTATTTTCACGTCCGGCCTCTCAATGTTGGAGAGCTTGAAAATTGGCACAACTATCTGGACTTTTTAGAAAGGGAAGGTGACTTAAGCAAGATTGTCAAGTTGTATGAGAGGTGTGTCATTGCATGTGCCAATTATCCTGAGTATTGGATACGCTATGTTTTGTGTATGGAAGCCAGTGGAAACATGGATCTTGCAAATAATGTTCTTGCCCGAGCCACCCAAGTCTTTGTTAAGAGACAACCGGAGATACATCTTTTCTGTGCACGGTTTAAGGAGCAGAATGGAGATATAGAGGGTGCTAGAGCTGCCTATCAACTTGTGCATACCGAAACTTCCCCTGGTCTTCTTGAAGCAATAATCAGGCATGCCAATATGGAACACCGATTGGGAAAAATGGAGGATGCCTTCTCTTTGTACGAACAGGCCATTGCTATTGAGAAAGGAAAAGAACATTCACAAACATTGCCGATGTTGTTTGCTCAGTATTCTCGATTTGTTTATTTGGCTTCCGGGAATGCAGAGAAGGCAAGACAGATTTTAATTGAGGGGCTGGAGAATGTTTTGTTGTCAAAACCACTTCTCGAGGCCTTATTGCATTTTGAGGCTATTCAACCCTTTCCAAAGCGAGTTGATATCAACTTTCTGGAGTCATGGGTATGCAAATTTATAATGCCTAACTCAGAGAGTCCTAGTGTAGCTAGTGCAATTGAGCGTGAGGAGCTTTCTAGTATTTTTCTGGAGTTTTTGAATCTCTTTGGAGATGTTCAATCAATCAAGAGAGCAGAGGATANGCATGCCAAATTGTTTTTGCCACACAGAAGCATGTCGGAGTTGAAGAAACGTCATGCCGAGGATTTCTTATCTTCAGACAAAGTTAAAGCATCAAGAACTTATTCTGCTCAATCACCCGCCCAATCCGTGATTGGTGCGTATCCAAATGCACAAAACCAATGGACTAATTATGGAGTACAACCTCAAACTTGGCCTCCTGTTACACAAGCACAGGGGCAACAGTGGACTGCTGGCTACACCCAGCAGGCTTCTTACGGGGCTTATGCTGGATATGGCGGCAATTATGCAAATTCTCAATTGCCTGCAACAGTTCCACCGAGTACAGCATACGGGACCTATCCTCCTTCTTATCCTGCTGCACAGCCGGCGGTTCCTCAACAGCCCTATGTGCAACCTGTTGCAGCTCCTGCACAGCAACCTGCTGCAGTTCCTCAAGCCTATTACGGTAGTTATTATTGA 2547 0.4472 MADSESVATEASAHSAADAYASAGYAESGSNPAIEAGATTDQPAGEGGQSTSTYGFGYSNTGDVNAYTGDPNSVLQQSQFNATGDTKPAGGVPDANEASAGVGSTAAEPALTSNYSSSVNGSVTNAAGLENGNALENVDGSADEKQLADGYGAALSAEEDRLWNIVRANSLDFSAWTSLIEETEKVAEDNILKIRRVYDSFLAEFPLCYGYWKKYADHEARLGTIDKVVEVYERAVQGVTYSVDIWLHYCIFAISTYGDPDTVRRMRSTVISPLYGGKALMGFHARMLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWARLAIIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTAEEAAVSVASEATGQGSEGEVHPDGAEKSPKSVSAGLTEAEELEKYIAIREEIYKKAKEFDSKIFGFETAIRRPYFHVRPLNVGELENWHNYLDFLEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGNMDLANNVLARATQVFVKRQPEIHLFCARFKEQNGDIEGARAAYQLVHTETSPGLLEAIIRHANMEHRLGKMEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILIEGLENVLLSKPLLEALLHFEAIQPFPKRVDINFLESWVCKFIMPNSESPSVASAIEREELSSIFLEFLNLFGDVQSIKRAEDXHAKLFLPHRSMSELKKRHAEDFLSSDKVKASRTYSAQSPAQSVIGAYPNAQNQWTNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGGNYANSQLPATVPPSTAYGTYPPSYPAAQPAVPQQPYVQPVAAPAQQPAAVPQAYYGSYY* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0299 848 Gene3D Tetratricopeptide repeat domain 438 735 IPR011990 GO:0005515
Vra3g0299 848 SUPERFAMILY TPR-like 403 705 IPR011990 GO:0005515
Vra3g0299 848 MobiDBLite consensus disorder prediction 1 105 - -
Vra3g0299 848 MobiDBLite consensus disorder prediction 33 85 - -
Vra3g0299 848 Gene3D Tetratricopeptide repeat domain 164 353 IPR011990 GO:0005515
Vra3g0299 848 SMART hat_new_1 284 315 IPR003107 GO:0006396
Vra3g0299 848 SMART hat_new_1 603 635 IPR003107 GO:0006396
Vra3g0299 848 SMART hat_new_1 458 490 IPR003107 GO:0006396
Vra3g0299 848 SMART hat_new_1 189 221 IPR003107 GO:0006396
Vra3g0299 848 SMART hat_new_1 562 597 IPR003107 GO:0006396
Vra3g0299 848 SMART hat_new_1 223 255 IPR003107 GO:0006396
Vra3g0299 848 SMART hat_new_1 317 350 IPR003107 GO:0006396
Vra3g0299 848 SMART hat_new_1 492 525 IPR003107 GO:0006396
Vra3g0299 848 PANTHER PRE-MRNA-PROCESSING FACTOR 39 84 834 - -
Vra3g0299 848 MobiDBLite consensus disorder prediction 365 392 - -
Vra3g0299 848 SUPERFAMILY TPR-like 166 348 IPR011990 GO:0005515
Vra3g0299 848 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 84 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0299 Vra-Chr3 3548334 3558910 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0299 K13217 - gmx:100787373 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0299 3 3548334 3558910 Vra3g0299 3 3548334 3558910 ECH