Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra3g0282 | ATGGCCACCACCGCAACTAACTGTCTCCAACTGGCCGGCGCCACCGTGTCCACTCACCGGAGAACTTCCATTTCCTGCAAGAAGAAATCGGATAAGATTGCATTCAAGGAAACGAAAGAAGGCTTCGTCGACTACGACCGAGGCCTGCACGAGGTCTCCACCAAAATTTCCGGCCTCCGCAAGGACAACATCGCCACCCGCTACCGCGTCCGCGTCGCCGGAAACCGCTTCCAGAAGGACTGGACAGTTTCCGAGGTCGCCGACCTCGTCCTCTCGCTCGACCTCTCCGACGACATCGATGGCCTACTCAACCATTGGATAGGCCGCTTCGCACGCAAGAATTTCCCCTACCTCATTAAGGAATTGACGCAGCGAGGGTCCATTGAACATTGTAATCGCGTGTTCAGGTGGATGAAGTTACAGAGGAACTACTGTGCGCGTAATGATATATACAACATGATGATTAGGTTGCACGCTCGTCACAACCGAACGGACCATGCGCGTGGATTGTTTTTTGAGATGCAGGAATGGAGGTGTAAACCGGATGTTGAAACTTACAATGCTCTTATCAACGCACATGGTCGAGCTGGACAGTGGCGTTGGGCTTTGAATATCATGGATGACATGCTGCGTGCAGCTATACCACCGAGTAGGTATACTTATAACAACTTGATAAATGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTCAGCGTTTGCAAGAAAATGACAGACAACGGTGTTGGGCCCGATCTTGTTACTCACAATATTATTCTGTCTGCATTTAAAAGTGGTGCTCAGTATTTGAAAGCTCTGTCATATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACCACACTTAATATTGTTATCCATTGTCTGGTAAAGCTTCAACAATATGACAAAGCTATTGATATTTTTAATTCCATGAGGGAGAAGAAATCAGAATGTACCCCTGATGTTGTTACATTCACAAGTATCATTCACTTGTATTCTGTGTGTGGGCAAGTTGAAAATTGTGAAGCTGCATTTAATATGATGCTTGCAGAAGGGCTGAAACCTAATATAGTCTCGTATAATGCACTGATAGGTGCATATGCTGCTTGTGGGATGGACAATGAGGCACTTTTGGTTTTCAATGAGATAAAAAAAAATGGTCTCCGCCCTGATGTTGTATCATATACGTCTCTCCTTAATGCTTATGGAAGGTCACAAAAACCCCAAAAAGCAAGGGAAATATTTGATATGATGAAGAAAAACAAGTTGAAGCCAAACCTTGTCAGTTACAATTCACTTATTGATGCCTATGGATCTAGTGGTTTTCTGACAGATGCAATTGAAGTCTTGCGAGAAATGGAACAAGATGGAATTCAACCAAATGTTGTTTCAATATGCATACTCTTGGCTGCATGTGGACGATGCAGTCGGAAGGTGAAGATTGACACAGTCCTAACAGCTGCTAAGATGAGAGGAATTAAGTTAAACACAGTTGCATATAATTCAGCTATAGGAAGCTATATGAATGTAGGGGAATATGACAAAGCTATAGACTTGTACAAATCTATGACGAAGAAAAAAATTAAAACTGATTCTGTTACTTACACTGTGTTGATTAGTGGTTGTTGTAAGATGTCAAAATATGGTGAAGCCCTATCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTTTGTCCAAAGAGGTCTACTCTTCTGTCATATGTGCCTATAGCAAACAGGGCCAAATTGAAGAAGCAGAATCTACATTTGACTTGATGAAATCATCTGATTGTTACCCTGATGTGGTTACATACACCTCCATGCTTGATGCTTACAATGCAGCTGGGAATTGGGAGAAAGCCTATGCACTCTTTGACGAAATGGAAGCAAGTGACATCAAGCTAGATACCATTGCCTGTGCAGCCCTAATGAGATCTTTTAATAAAGGTGGTCAACCGGGAAGGGTGCTTAGTCTAGCACAAAGCATGAGAGAAAAAGAAATTCCTTTCACTGATACCATATTATTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGACATGATCAAGTACATAGAGCCCTCACTTCCTCTAATTTCATCCGGATGTTTGAATCAGTTGCTGCATGCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCGTCTGGTATTGATGTTAACTTAAACACTTACTCTATTTTACTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGCAGGTATTGCAATGGATGGAGGATGCAGGCATTCATCCATCAAATGAAATGTTCCATGATATATCTTCGTATTCACAAAAATGCTGTGGGCACGAAAATGCTGCTGTTATAAAAGAAAGACTTGAATCCTTGAAAAGAAAATCTGAGGATCAAATTTCTACCAGCCGACCAGTTGAAACTCCGGTTCTTAGTTGA | 2493 | 0.4172 | MATTATNCLQLAGATVSTHRRTSISCKKKSDKIAFKETKEGFVDYDRGLHEVSTKISGLRKDNIATRYRVRVAGNRFQKDWTVSEVADLVLSLDLSDDIDGLLNHWIGRFARKNFPYLIKELTQRGSIEHCNRVFRWMKLQRNYCARNDIYNMMIRLHARHNRTDHARGLFFEMQEWRCKPDVETYNALINAHGRAGQWRWALNIMDDMLRAAIPPSRYTYNNLINACGSSGNWKEALSVCKKMTDNGVGPDLVTHNIILSAFKSGAQYLKALSYFELMKGTHIRPDTTTLNIVIHCLVKLQQYDKAIDIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMLAEGLKPNIVSYNALIGAYAACGMDNEALLVFNEIKKNGLRPDVVSYTSLLNAYGRSQKPQKAREIFDMMKKNKLKPNLVSYNSLIDAYGSSGFLTDAIEVLREMEQDGIQPNVVSICILLAACGRCSRKVKIDTVLTAAKMRGIKLNTVAYNSAIGSYMNVGEYDKAIDLYKSMTKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEMMHLKLPLSKEVYSSVICAYSKQGQIEEAESTFDLMKSSDCYPDVVTYTSMLDAYNAAGNWEKAYALFDEMEASDIKLDTIACAALMRSFNKGGQPGRVLSLAQSMREKEIPFTDTILFEMVSACSILQDWRTAVDMIKYIEPSLPLISSGCLNQLLHALGKSGKIETMLKLFFKMLASGIDVNLNTYSILLKNLLSSGNWRKYLEQVLQWMEDAGIHPSNEMFHDISSYSQKCCGHENAAVIKERLESLKRKSEDQISTSRPVETPVLS* | 831 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 150 | 183 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 431 | 465 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 572 | 605 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 185 | 217 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 326 | 360 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 361 | 395 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 396 | 429 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 606 | 640 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 536 | 566 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 714 | 744 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 254 | 288 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 290 | 321 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 219 | 252 | IPR002885 | - | |
| Vra3g0282 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 501 | 534 | IPR002885 | - | |
| Vra3g0282 | 830 | SUPERFAMILY | TPR-like | 182 | 314 | IPR011990 | GO:0005515 | |
| Vra3g0282 | 830 | Pfam | Pentatricopeptide repeat domain | 447 | 476 | IPR002885 | - | |
| Vra3g0282 | 830 | Pfam | Pentatricopeptide repeat domain | 732 | 780 | IPR002885 | - | |
| Vra3g0282 | 830 | Pfam | Pentatricopeptide repeat domain | 382 | 441 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 217 | 251 | IPR002885 | - | |
| Vra3g0282 | 830 | Pfam | PPR repeat family | 499 | 547 | IPR002885 | - | |
| Vra3g0282 | 830 | Pfam | PPR repeat family | 286 | 333 | IPR002885 | - | |
| Vra3g0282 | 830 | Pfam | PPR repeat family | 572 | 615 | IPR002885 | - | |
| Vra3g0282 | 830 | Pfam | PPR repeat family | 181 | 228 | IPR002885 | - | |
| Vra3g0282 | 830 | Gene3D | Tetratricopeptide repeat domain | 388 | 457 | IPR011990 | GO:0005515 | |
| Vra3g0282 | 830 | Gene3D | Tetratricopeptide repeat domain | 246 | 316 | IPR011990 | GO:0005515 | |
| Vra3g0282 | 830 | Gene3D | Tetratricopeptide repeat domain | 82 | 245 | IPR011990 | GO:0005515 | |
| Vra3g0282 | 830 | Gene3D | Tetratricopeptide repeat domain | 708 | 777 | IPR011990 | GO:0005515 | |
| Vra3g0282 | 830 | Gene3D | Tetratricopeptide repeat domain | 317 | 387 | IPR011990 | GO:0005515 | |
| Vra3g0282 | 830 | Gene3D | Tetratricopeptide repeat domain | 458 | 565 | IPR011990 | GO:0005515 | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 744 | 779 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 429 | 463 | IPR002885 | - | |
| Vra3g0282 | 830 | PANTHER | OS07G0213300 PROTEIN | 22 | 788 | - | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 147 | 181 | IPR002885 | - | |
| Vra3g0282 | 830 | Pfam | PPR repeat | 150 | 179 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 394 | 428 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 569 | 603 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 252 | 286 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 324 | 358 | IPR002885 | - | |
| Vra3g0282 | 830 | SUPERFAMILY | TPR-like | 287 | 670 | IPR011990 | GO:0005515 | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 604 | 638 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 182 | 216 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 534 | 568 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 359 | 393 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 709 | 743 | IPR002885 | - | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 287 | 321 | IPR002885 | - | |
| Vra3g0282 | 830 | PANTHER | RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED | 22 | 788 | - | - | |
| Vra3g0282 | 830 | Gene3D | Tetratricopeptide repeat domain | 566 | 695 | IPR011990 | GO:0005515 | |
| Vra3g0282 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 499 | 533 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra3g0282 | 232 | 793 | Glycosyltransferase | AT1G05670 | 23.894 | 1.06e-40 | 158 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra3g0282 | - | - | gmx:100814643 | 1476.84 |