Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0247 ATGCTCCCTCCGCAGAGTGACTGCAGAGACATTTGCAAGGTGCTGGTGTGTCTAACACATTCAAGGTTACTCCCCAAGGGTCTTCAACTCCATGCATACGTCATCAAATTAGGGTTTGAAGCTCTTCCATTGGTGTGCCATCATTTGATCAACTTCTACTCCAAAACTAACCTTCCTCACTCCTCGCACAAACTCTTCGATTCCTTTCCCCACAAGTCCGCCACCACATGGAGCTCCGTCATTTCCGCCTTCGCCCAGAACGACCTCCCCCACCTCGCCCTCCGCTTCTTCCGTCGCATGCTCCGCCACGGCCTCCTTCCCGACGACCACACCCTCCCCACCGCCACAAAGTCCTGCGCCGCCCTCTCGTCCCTCCCCACCGCCAACTCCCTCCACGCGCTCGCCCTAAAAAGCGCCAACCACTTCGACGTGTTCGTTGGAAGCTCCCTCGTCGATATGTACGCTAAATGCGGCGAAATAAACAACGCGCGCAAGGTGTTCGACGAAATGCCTCATAAAAACGTTGTTTCCTGGAGCGGCCTGATATATGGATACTCCCAATTGGGTCTCGATGAGGAGGCTTTGAACCTCTTTAAATGTGCTTTGCAGCAGGATTATGATATTCGAGTTAATGATTTTACATTGTCTAGTGTTTTGAGGGTTTGTAGTGCTTCCACTTTGTTTGAGTTGGGCAAGCAAGTGCATGGATTGTGCTTTAAGACGAGTTTTGATTCGTCCTGCTTTGTGGCTAGTTCATTGATCTCGTTGTACTCCAAGTGTGGAGTTGTGGAAGGGGGTTACAAAGTTTTTGAGGAGGTGAAGGTTAGGAACCTTGGCATGTGGAATGCGATGTTGATTGCGTGTGCTCAGCATGCTCACACGGGGAAAACTTTTGAGCTGTTTGAAGAGATGGGGAGTGTCGGGGTGAAGCCGAATTTCATCACGTTCTTGTGTCTGCTTTATGCGTGCAGCCATGCGGGGTTGGTGGAGAGGGGGAAGCATTACTTTGGGTTGATGAAGGAGCATGGGATTGAACCCGGATCGCAGCATTATGCAACCATGGTCGATTTGCTTGGTCGTGCTGGGAAGTTGGATGAAGCGTTTCGGGTGATTGAGGGCATGCCTATGGAGCCAACGGAATCTGTTTGGGGGGCTTTGTTGACTGGGTGCAGGCTTCATGGGAACACTGAATGGGCTTCATTTGTGGCTGATAGGATTTTTGAGATGGGTGCTGTAAGTTCTGGGATTAATGTCTTGCTTTCTAATGCTTATGCTGCTGCTGGGAGATGGGAGGAGGCGGCGAGAGCGAGAAAAATGCTGAGGGATCAGGGAATAAAGAAAGAAACTGGTTTGAGTTGGGTGGAGGAGGGTAACAGGGTTCATACATTTGCTGCTGGGGATAGGTCTCATGGGAAGACCAAGGAAATTTATGAGAAGTTGGAGGAGCTGGGAGAGAAAATTGCGAAAGCTGGGTATGTTGCAGACACGTCTTTCGTGTTAAAAGAAGTGGACGGAGATGAGAAGAGTCAAACTATAAGGTATCACAGTGAAAGGTTGGCCATAGCGTTTGGACTTATTACTTTTCCTCAGGAGCGACCTATCAGAGTGATGAAGAACTTGCGTGTTTGTGGTGATTGCCACACTGCCATCAAGTTTATTAGCAAATGTACCGGAAGGGTAATCATTGTGAGGGATAATAACCGGTTCCATCGATTTGAGGAGGGAAAATGCACATGCGGAGATTATTGGTGA 1752 0.4937 MLPPQSDCRDICKVLVCLTHSRLLPKGLQLHAYVIKLGFEALPLVCHHLINFYSKTNLPHSSHKLFDSFPHKSATTWSSVISAFAQNDLPHLALRFFRRMLRHGLLPDDHTLPTATKSCAALSSLPTANSLHALALKSANHFDVFVGSSLVDMYAKCGEINNARKVFDEMPHKNVVSWSGLIYGYSQLGLDEEALNLFKCALQQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGKTFELFEEMGSVGVKPNFITFLCLLYACSHAGLVERGKHYFGLMKEHGIEPGSQHYATMVDLLGRAGKLDEAFRVIEGMPMEPTESVWGALLTGCRLHGNTEWASFVADRIFEMGAVSSGINVLLSNAYAAAGRWEEAARARKMLRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTKEIYEKLEELGEKIAKAGYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPQERPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEEGKCTCGDYW* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0247 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vra3g0247 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Vra3g0247 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Vra3g0247 583 PANTHER OS01G0913400 PROTEIN-RELATED 6 527 - -
Vra3g0247 583 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Vra3g0247 583 PANTHER BNAA10G28390D PROTEIN 6 527 - -
Vra3g0247 583 Gene3D Tetratricopeptide repeat domain 330 521 IPR011990 GO:0005515
Vra3g0247 583 TIGRFAM PPR: pentatricopeptide repeat domain 76 108 IPR002885 -
Vra3g0247 583 TIGRFAM PPR: pentatricopeptide repeat domain 351 374 IPR002885 -
Vra3g0247 583 TIGRFAM PPR: pentatricopeptide repeat domain 280 312 IPR002885 -
Vra3g0247 583 TIGRFAM PPR: pentatricopeptide repeat domain 314 347 IPR002885 -
Vra3g0247 583 TIGRFAM PPR: pentatricopeptide repeat domain 149 175 IPR002885 -
Vra3g0247 583 Pfam DYW family of nucleic acid deaminases 491 583 IPR032867 GO:0008270
Vra3g0247 583 Pfam PPR repeat 176 199 IPR002885 -
Vra3g0247 583 Pfam PPR repeat 76 105 IPR002885 -
Vra3g0247 583 Pfam PPR repeat 148 174 IPR002885 -
Vra3g0247 583 Pfam PPR repeat 351 375 IPR002885 -
Vra3g0247 583 Pfam Pentatricopeptide repeat domain 277 323 IPR002885 -
Vra3g0247 583 Pfam E motif 393 455 IPR046848 -
Vra3g0247 583 Gene3D Tetratricopeptide repeat domain 128 232 IPR011990 GO:0005515
Vra3g0247 583 Gene3D Tetratricopeptide repeat domain 233 329 IPR011990 GO:0005515
Vra3g0247 583 Gene3D Tetratricopeptide repeat domain 5 127 IPR011990 GO:0005515
Vra3g0247 583 Pfam E+ motif 460 486 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0247 Vra-Chr3 2812251 2814861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0247 24 583 Glycoside Hydrolase AT3G49170 36.140 1.11e-123 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0247 - - gmx:100800235 1063.91