Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0232 ATGCCACTAAAGACCGGGAATCTTAAAATGAAGAACCCACTTATCTTCCTCATATTCCTACTTCTCACCCAATCCCTTCTCGCCACGTCATCACCGTTAAACCTGATCCCAATCAACCTCTCCGTCGCCGACTTCGGCGCCACCGGCGACGGTAGCTGCTACGACACCGAACCGATCCAATCGGCCATCAACTCCTGTCCGGAGGGTGGTCCCTGCCACGTCATCTTCCCGGCACCGGGAAAGTACCTTACGGCCACCGTGTTCCTGAAATCCGGCGTGGTGCTAGTTGTGGAGCCCGGTGCTACCATCCTGGGCGGCACCAGGCTTGAGGACTACCCGAAGGAGTTCTGGCGGTGGTACGTGGTGGTGGCGGAGAACGCGACGAACGTGGGAATCCGCGGCGGCGGAGTGGTGGATGGTCAGGCTACGAAGTTCGTAGTGAGGGAAGATCCGAGGAAGAACGTGATGGTTAGTTGGAACCAAACTGGGGCTTGCTTGGGAGACGAATGCAGACCTAGACTCATTGGATTTATTGGTTGCAACAATGTTGAAGTTTCTAACATCACTCTCAACCATCCTGCTTATTGGTGCTTACACTTGGTCCGGAGTAATAACATATCCATTAAAGATATTGCAATTAATGGGGACTTTAACATACCAAACAATGACGGGATTGACATTGAGGACTCAAACAACACAGTAATCACTCGATGCCACATCGATACCGGGGATGATGCAATCTGTCCAAAGACATACACATGTCCTGTTTACAACCTTACAGTCACCGATAGTTGGATTCGATCCAAATCTTCTGCAATTAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGATAATATCACTATTGTTGATTCTCATAGAGGGATTGGATTCCAGATCCGTGACGGAGGAAATGCAAGTGACATTGTATTCTCAAACATTAATATCAGCACAAGATATTATGACCCGTTATGGTGGGGTAGAGCAGAGCCTATCTATGTAACGAGTTGTCCCCGAGACTCAACCTCAAAGGAGGCTTCAATATCTGATGTACATTTCGTTAACATCACTGCAAATTCTGAAAATGGCATCTTCCTGTCTGGTTCAAAGAGAGGATTGCTTAGAAACTTGAGATTCATCAACATGGACATTACATACAGAAGGTTCACCAATTATTCTGGTGGGTTATTGGACTATAGGCCAGGATGCCAAGAGTTAGTTAAACACAGGACTGCGGGCATAATGATGGAGCACATTGAAGGGCTTGAGGTTAAAAATGTTGAAATGAGATGGTCAAACAATCAACTAGAGCAGTGGAATAATCCTTTGGAGTTCAGACCGTCTACTGTGAATAATATATCTTTCCTTAATTTTAGTTCTGGTTTGTATACAGATGGCAAATTAAACTATTAA 1425 0.4575 MPLKTGNLKMKNPLIFLIFLLLTQSLLATSSPLNLIPINLSVADFGATGDGSCYDTEPIQSAINSCPEGGPCHVIFPAPGKYLTATVFLKSGVVLVVEPGATILGGTRLEDYPKEFWRWYVVVAENATNVGIRGGGVVDGQATKFVVREDPRKNVMVSWNQTGACLGDECRPRLIGFIGCNNVEVSNITLNHPAYWCLHLVRSNNISIKDIAINGDFNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTCPVYNLTVTDSWIRSKSSAIKLGSASWFDFKHFVFDNITIVDSHRGIGFQIRDGGNASDIVFSNINISTRYYDPLWWGRAEPIYVTSCPRDSTSKEASISDVHFVNITANSENGIFLSGSKRGLLRNLRFINMDITYRRFTNYSGGLLDYRPGCQELVKHRTAGIMMEHIEGLEVKNVEMRWSNNQLEQWNNPLEFRPSTVNNISFLNFSSGLYTDGKLNY* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0232 474 PANTHER PECTIN LYASE-RELATED 36 466 - -
Vra3g0232 474 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 36 466 - -
Vra3g0232 474 Gene3D - 25 399 IPR012334 -
Vra3g0232 474 SUPERFAMILY Pectin lyase-like 18 403 IPR011050 -
Vra3g0232 474 Pfam Glycosyl hydrolases family 28 120 390 IPR000743 GO:0004650|GO:0005975
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0232 38 468 Glycoside Hydrolase AT3G57790 68.481 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0232 - - gmx:100794954 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0232 3 2613823 2617303 Vra3g0232 3 2613823 2617303 ECH