Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0217 ATGAGTTTTGCGAATTTTGGAAGATGGGCTCCTTTGAGGTCTATGCCGATGAAGAGGAACACACGTTCACTTCTCAGTCCCATAGACACTGTGGGAAGAGAAGAAATTGGATTCAATTTCCAAGCTTACATGCAGCACAAGATTAACACAGTGAACCGAGCCTTGGACGCTGCAATCGAGCTCAAGGAGCCCAAGATTATCCACGAAGCCATGCCCTACACGCTCCTCCCAGGCGGCAAGAAGATCCGCCCGGTGCTCTGCATCGCCGCGTGCGAGCTCGTCGGAGGAACCGATTACACCGCCGTACCCGCCGCATGCGCTGTCGAGATGGTCCATGCCATGTCGCTCATCCACGACGACTTGCCCAGCATTGACAACGATGACCTACGGCGAGGGAAGCCGGCGTGCCACAAGGTCTTTGGCGAGAACGTGGCGATCCTCGCAGGCGATGCGCTGCAGGCCTGCGCGTTCGAGCACTTGGCGGCGTCGACGAAGGGCGTGTCTCCCACTCGCGTGGTTCGCGCGATAGTGGAGTTGGCGAAATCGGTCGGCGCGGAAGGCGTTGCGGGGGGACAAGTGATGGATGTGAGCTCGGAAGGGTTGTCGAGTGAGGTGGGTTTGGAGAGGGTGGAATTGATTCACCTTAAGAAATCGGCGGTGTTGATGGAAGTTGCGGTTGTGTTGGGAGCAATAAGGGGGGGTGGGTCGGACGAGGAAGTTGAAAAGTTAAGGATGTTTGGTCGGTGCGTTGGGTTGATAGGTCAGATTGTGAATGATATTGAAGATGTTACGAAATCGACGGAGGAGTTGGGGCGGACGGCGGGGAAGGACTTGGTGGTTGATAAAGTCACATATCCCAAGGTTTTTGGAATGGATAAGTCTATGGAGATTGCTGAGAAATTGGTGGAGGATTCCAAGGAAATCTTGGCTGGGTTTGATAACCCAAAGGTAGTTCCACTGTGTGCTGTAACTAATTACATTGCAGGCAAAATTAATTAG 999 0.5355 MSFANFGRWAPLRSMPMKRNTRSLLSPIDTVGREEIGFNFQAYMQHKINTVNRALDAAIELKEPKIIHEAMPYTLLPGGKKIRPVLCIAACELVGGTDYTAVPAACAVEMVHAMSLIHDDLPSIDNDDLRRGKPACHKVFGENVAILAGDALQACAFEHLAASTKGVSPTRVVRAIVELAKSVGAEGVAGGQVMDVSSEGLSSEVGLERVELIHLKKSAVLMEVAVVLGAIRGGGSDEEVEKLRMFGRCVGLIGQIVNDIEDVTKSTEELGRTAGKDLVVDKVTYPKVFGMDKSMEIAEKLVEDSKEILAGFDNPKVVPLCAVTNYIAGKIN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0217 332 Gene3D Farnesyl Diphosphate Synthase 33 332 IPR008949 -
Vra3g0217 332 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 29 331 - -
Vra3g0217 332 ProSitePatterns Polyprenyl synthases signature 1. 116 132 IPR033749 -
Vra3g0217 332 SFLD Polyprenyl Transferase Like 42 310 - -
Vra3g0217 332 PANTHER HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE LARGE SUBUNIT 1, CHLOROPLASTIC 29 331 - -
Vra3g0217 332 Pfam Polyprenyl synthetase 65 298 IPR000092 GO:0008299
Vra3g0217 332 CDD Trans_IPPS_HT 63 327 IPR000092 GO:0008299
Vra3g0217 332 SFLD Isoprenoid Synthase Type I 42 310 - -
Vra3g0217 332 SUPERFAMILY Terpenoid synthases 41 318 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0217 Vra-Chr3 2475220 2476329 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0217 K13789 - gmx:100778289 411.379