Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0202 ATGTGCATGGCGAGCCCAGGTTTATACCGCAGAGAGCTACCTTCCCCTGCAATCGAGTTTGCTTCGCCCCTAGGCAAGAAGCTGTTCGGCGAGGCACATGAGCAAGGAACCATGGAAGCCTTCTTCAAGCTAATATCCTACTATCAGACGCAATCAGAGCCTTCATACTGCGGTCTCGCCACACTTTCCGTTGTTCTCAATGCCCTTGCTATTGATCCTGGAAGAAAATGGAAAGGTCCTTGGAGATGGTTTGACGAGTCCATGCTGGATTGCTGTGAGCCTTTGGCTCAAATTAAACTGGAAGGCATTACGTTCGGGAAAGTTGCGTGTTTGGCTCGATGCAATGGAGCTAAGGTGGAAGCCTTTCGTTCGGATAAAAGCTCGGTTGATGAGTTTCGCAAACGTGTGATTTCGTGCTCTCAGTCTGAGGATTCTCATGTGATTGTATCTTACCACAGGACACCCCTCAATCAGACCGGAATAGGTCATTTTTCACCAGTTGGAGGATATCACGCTGAAAGGGATATGGTCCTCGTATTGGATGTTGCTCGTTTCAAGTATCCTCCTCACTGGGTTCCCCTTAACCTTCTCTGGGAGGGAATGAGCACCATTGATCAAGCAACGGGACTTCGAAGGGGGTACATGGTTATTTCAAGGCTTAACAGAGCACCCTCTATACTTTATACTGTGAGTTGTAGACATGAAGGTTGGAGCCGTGTCGCCAAATTTCTAACTGAAGATGTCCCTCAACTTCTAAAGTCAGAGGATCTAAAAGATGTTCAGGAAGTGCTGTCTGTTGTTTTTAAACCGCCACCTAGTGAATTGAGAGGGTTAATAACATGGATTGCTGAAGTTCGCAGACAAGAAGATGGAAATCTCACATTGAGCGACGAGGAAAAAGGAAGGCTTGCTTTAAAGGCTGACATACTGGAACAGATTCGAACAACTGCAATCTTCAAACACGTGACCAGATGGTTGGATTCTGAACATTCACGTTCTAAAACATATGCAAACCTTGGTGACGAAGATACGCTAGCAATACTTGCCACCGGTGTTTGTTGCCAAGGGGCAGATCTTTTGACTGGTTGTGGTAGGTTAGGTTTGTCAGGTGGAAAAAACTGCTGTCAAATAGAGGTAAAACTTCTGAATGTTGACAGTGACAATCCAGGAACATTAGTTTCAGGAACTGTTACAACTAGTGGTGGTAGTGAAGAAGTTGAAGTGTTGGTCCCTCTGTGTCAAAGGGAGCCAAGCAGGTTATGTCTTTATAATGAAGGTCACTGCATAGAGATGCACCCGTGTGATGCAGATTTCTTAACGGTACTCTTATTGGCCTTGCCCTTGCATACATGGTCGGGTTTTAAAGAAGAAAAGCTGCGAGTGGAAGTTTTGAGCCTTCTAGCAACTGAAGATCTCCCTCCCCTACTTCAGGAAGAGGTTTTGTTATTGCGAGACCAACTTCATTTTCTCATGCAACGTTGTGGTGACGTGTAG 1494 0.4572 MCMASPGLYRRELPSPAIEFASPLGKKLFGEAHEQGTMEAFFKLISYYQTQSEPSYCGLATLSVVLNALAIDPGRKWKGPWRWFDESMLDCCEPLAQIKLEGITFGKVACLARCNGAKVEAFRSDKSSVDEFRKRVISCSQSEDSHVIVSYHRTPLNQTGIGHFSPVGGYHAERDMVLVLDVARFKYPPHWVPLNLLWEGMSTIDQATGLRRGYMVISRLNRAPSILYTVSCRHEGWSRVAKFLTEDVPQLLKSEDLKDVQEVLSVVFKPPPSELRGLITWIAEVRRQEDGNLTLSDEEKGRLALKADILEQIRTTAIFKHVTRWLDSEHSRSKTYANLGDEDTLAILATGVCCQGADLLTGCGRLGLSGGKNCCQIEVKLLNVDSDNPGTLVSGTVTTSGGSEEVEVLVPLCQREPSRLCLYNEGHCIEMHPCDADFLTVLLLALPLHTWSGFKEEKLRVEVLSLLATEDLPPLLQEEVLLLRDQLHFLMQRCGDV* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0202 497 Pfam Phytochelatin synthase 9 214 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Vra3g0202 497 SUPERFAMILY Cysteine proteinases 13 218 IPR038765 -
Vra3g0202 497 PANTHER GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE 7 492 - -
Vra3g0202 497 Pfam Domain of unknown function (DUF1984) 232 487 IPR015407 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Vra3g0202 497 ProSiteProfiles Phytochelatin synthase (PCS) domain profile. 3 222 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Vra3g0202 497 Gene3D - 17 222 IPR038156 -
Vra3g0202 497 PANTHER GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE 7 492 IPR040409 GO:0016756|GO:0046872|GO:0046938
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0202 Vra-Chr3 2343436 2347612 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0202 K05941 - gmx:100782042 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0202 3 2343436 2347612 Vra3g0202 3 2343436 2347612 ECH