Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0201 ATGGCGACGGCGGGATTGTACCGACGCCTTCTTCCTTGTCCTCCCGCCGTCGAATTTGCTTCCTCACAAGGCAAGGAACTTTTTCTCGAAGCCATTCACAATGGAACCATGGAAGGCTTTTACAAGTTGGTTTCTCACTTTCAAACACAGTCTGAGCCCGCTTTCTGCGGTCTCGCTAGCTTGTCTATGGTTCTCAATGCTCTTGCCATTGATCCTGGAAGGAAGTGGAAAGGGCCTTGGAGATGGTTTGATGAATCTATGTTGGACTGTTGTGAATCTCTAGAAAAGGTGAAAGTTCAGGGCATCACGTTTGGGAAGCTTGTGTGTTTGGCACAATGTGCTGGAGCCAAAGTTGATTCCTTTCGTGCTAGCCATAGCAGCCTTGATGATTTTCGGAAATATGTCATCAAGTGTTCCATGTCTGATGAGTGTCACGTTATCTCCTCGTACCATAGAGCTGCCCTTAAGCAAACTGGAAATGGTCACTTTTCTCCTATTGGAGGATATCACGCTGGAAAGGACATGGCACTTGTTTTGGATGTTGCGCGATTTAAGTATCCTCCCCATTGGATCCCTCTTAAAATTCTCTGGGAAGGTATGAATTATGTCGACGAGGCTACTGGACGAACTAGAGGATTCTTGCTTGTATCAAGGCCTCATAGGGAACCTGGATTGCTTTATACTCTGAGCTGCAAACATGAGAGTTGGATTAATATTGCAAAGTTCCTAATGGACGATGTTCCTCTTCTATTAAAATCAGAGGATATCAAAGACGTTCATCAGGTTGTTTCAGTTATAGTCTCATCACTGCCATCCAAGTCTGAACAATTTATCAAGTGGGTGGCAGAGATCAGGAGGCGAGAGGATGGTGGTCCAAGTTTGAGCACAGAGGAGAAAGCAAGGCTTGCTATCAAGGAAGAGGTATTGAAACAGGTCCAGGAGACCGGCCTTTTCAAATATGTAGCTTCTTTTCTGTCAAATTCTTGCAGCAAGGAATCACCATATGATGCAGATGCGCTACCAGTCATTGCTGCAAGTATTTGTTGTCAAGGAGCAGAAATTTTAGCTGGGAAACCTTGGTCACCGGCAGGGTATAGCTGTCAAGTAACATGTATGAAATGCTTGAAAGCTGAAGATGACAAGCCAATAACAATGGTTTCTGGGACTGTGGTAAATGGTAACACTGAGCAAGGTGTTGATGTGTTGATTCCTTCTTCAAATAGGAAATTATGTAGGAATTGCTCTAGCCCAAGTAATTATATGAGGATGCATCCAGCTAGCACTGACGTGCTAACAGTGCTTCTACTGTCCTTACCATCTACAACATGGACCGGCATCAAAGATGAGCAGCTTTTGACAGAAATACACAGTCTGGTATCGACTGAAAACCTTCCCTCTTTGCTTCAAGAAGAGGTTCTGCATTTGAGACGTCAGCTTCACCTTCTCAAGAGACGTCAAGAGGGTAAGGTTGATCAGGATCTTGGTGCCCCTCACTCTTAG 1500 0.4473 MATAGLYRRLLPCPPAVEFASSQGKELFLEAIHNGTMEGFYKLVSHFQTQSEPAFCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCESLEKVKVQGITFGKLVCLAQCAGAKVDSFRASHSSLDDFRKYVIKCSMSDECHVISSYHRAALKQTGNGHFSPIGGYHAGKDMALVLDVARFKYPPHWIPLKILWEGMNYVDEATGRTRGFLLVSRPHREPGLLYTLSCKHESWINIAKFLMDDVPLLLKSEDIKDVHQVVSVIVSSLPSKSEQFIKWVAEIRRREDGGPSLSTEEKARLAIKEEVLKQVQETGLFKYVASFLSNSCSKESPYDADALPVIAASICCQGAEILAGKPWSPAGYSCQVTCMKCLKAEDDKPITMVSGTVVNGNTEQGVDVLIPSSNRKLCRNCSSPSNYMRMHPASTDVLTVLLLSLPSTTWTGIKDEQLLTEIHSLVSTENLPSLLQEEVLHLRRQLHLLKRRQEGKVDQDLGAPHS* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0201 499 Pfam Phytochelatin synthase 7 213 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Vra3g0201 499 SUPERFAMILY Cysteine proteinases 14 217 IPR038765 -
Vra3g0201 499 Pfam Domain of unknown function (DUF1984) 231 479 IPR015407 GO:0010038|GO:0016756|GO:0046872|GO:0046938
Vra3g0201 499 PANTHER GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE 5 491 - -
Vra3g0201 499 Gene3D - 16 220 IPR038156 -
Vra3g0201 499 PANTHER GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE 5 491 IPR040409 GO:0016756|GO:0046872|GO:0046938
Vra3g0201 499 ProSiteProfiles Phytochelatin synthase (PCS) domain profile. 1 221 IPR007719 GO:0010038|GO:0016756|GO:0046872|GO:0046938
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0201 Vra-Chr3 2339160 2342670 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0201 K05941 - gmx:547627 843.958