Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0189 ATGGAGCGCTTGAAGCTGGCGCAACTGGGGGAGAGGCTGAAGACCGGTGGGGCCCAGATGGGGCGAATGGTAAGCGGCAAGGTCAAGGAGATGCTGCAGGCTCCCACGCCGGAGTCCAAGATGGTCGACGAGGCCACGCTCGAAACCATGGAGGACCCTAATTGGGGCATCAATCTCAGGATATGTGCCATGATCAACGCCGACCAATTTAACGGCTCCGAGGTCGTTAAGGCCATCAAGAGGAAGATCAACCACAAGAGCCCTGTTGTTCAGACTCTTAGCCTCGACCTCTTGGAAGCCTGCGCCATGAACTGCGACAAGGTCTTCTCCGAAATCGCTTCCGAGAAGCTTCTAGATGACCTCGTTGCCTTGATTGATAACCCTCAGGCCCACCACAACACTCGACGTCGGGCTTTCCAGTTGATTCGAGCCTGGGGCGACTCCGAGGATCTTGCTTATCTTCCCGTCTTTCGTCAAACTTATATGAGATTGAAAGGGAGGGATGGTCCACTTGACATGGCGGGAGGAAATTCACCATCTATTCCGTATGCCTCAGAGTCATATGCACATCAATATCCTGTAGATCCCCCTGAAAGATACCCAATTCCTGATGCTGAACTAGATATGGATGATCCGGCGGCTTTCTCTTCTAATTACCAACAAATATCAGTGGAGGAGACGAAAGAGCATCTAGTGGTTGCTCGGAATAGTCTCGAGTTGCTTTCTAGCATATTGAGTTCTGAGGCTGACCCAAAACCTTTGAAGGAAGATTTAACTGTCAGCTTGTTGGGTAAGTGTAAGCAATCACTCTCTATCATCAAGGGGATTGTGGAAAGCACTACAGATGATGAAGCAACGCTTTTTGAGGCTTTATATCTCAATGATGAGCTTCAGCAGGTAATTTCCAACTATGAGAAGTTAGAAGCTGCTCAAATTTCTGGGACACCACATCCTCAAAATGCTGAACCCGCCAAGCATGACGCGGAAGCTATTCAAAATCCCAATGAAGTACCTGCAAGGTTTGAAATTGATGATTCGGAAGAATCTGAAGCTGATCAGAATCTGGATCGAAAGGTGCCCCAAAAATCGAACACTCTTGAAGTCAATGCAACTGAGGTCGAGGGGAATGGTCTTGCTGAAACTAAAATAGTTAAGGACTCAACGGAAAAGATTGGTGAATCTAGCTTCAAGCGAGATACCGTATGA 1206 0.4818 MERLKLAQLGERLKTGGAQMGRMVSGKVKEMLQAPTPESKMVDEATLETMEDPNWGINLRICAMINADQFNGSEVVKAIKRKINHKSPVVQTLSLDLLEACAMNCDKVFSEIASEKLLDDLVALIDNPQAHHNTRRRAFQLIRAWGDSEDLAYLPVFRQTYMRLKGRDGPLDMAGGNSPSIPYASESYAHQYPVDPPERYPIPDAELDMDDPAAFSSNYQQISVEETKEHLVVARNSLELLSSILSSEADPKPLKEDLTVSLLGKCKQSLSIIKGIVESTTDDEATLFEALYLNDELQQVISNYEKLEAAQISGTPHPQNAEPAKHDAEAIQNPNEVPARFEIDDSEESEADQNLDRKVPQKSNTLEVNATEVEGNGLAETKIVKDSTEKIGESSFKRDTV* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0189 401 SUPERFAMILY ENTH/VHS domain 34 167 IPR008942 -
Vra3g0189 401 PANTHER TOM1-LIKE PROTEIN 1 1 363 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vra3g0189 401 PANTHER TOM1-LIKE PROTEIN 2 1 363 - -
Vra3g0189 401 MobiDBLite consensus disorder prediction 344 380 - -
Vra3g0189 401 CDD VHS 39 165 - -
Vra3g0189 401 Pfam GAT domain 235 308 IPR004152 GO:0035091|GO:0043130
Vra3g0189 401 Pfam VHS domain 39 148 IPR002014 GO:0035091|GO:0043130
Vra3g0189 401 SUPERFAMILY GAT-like domain 187 308 - -
Vra3g0189 401 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
Vra3g0189 401 Gene3D - 216 311 IPR038425 -
Vra3g0189 401 Gene3D - 28 179 IPR008942 -
Vra3g0189 401 ProSiteProfiles GAT domain profile. 222 309 IPR004152 GO:0035091|GO:0043130
Vra3g0189 401 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0189 Vra-Chr3 2177439 2179935 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0189 - - gmx:100803803 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0189 3 2177439 2179935 Vra3g0189 3 2177439 2179935 ECH