Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0176 ATGTTCAGCAGGCCAAGAGGTGCCAGTGCATTTAGTATATTCAAATGGAAACAACCAGGTGCATCATCTCTGACAGCAGGTTTACTTCAGGAAGATCAGCTAGAGATTGAATTGTCTGATTATGGAAAGATTCCTAGTCCAGGCAGCGAGAGCCCTTCAGGGCTTCTTAATGGTGACAGCCTAAATGTAGAACCAATTTCTGATTTGGATCTCTTCTTTGAAAGGCTTTACAGCTATTACTGTGAGAAAGGGCTATGGTGCATCATTATAAAATGGATTGTTGAGCTTCTAAGTCTAGGGTTCACCATATGTTTTTCAGGATTTTTTTTATTATATGTTGACTGGAATGGACTCCGTAATGCAAAGTGTGGGATGGATGCTGTTGAATCTGGGATTAAGCCCTGTGATCTTGCTAAAGAAGCTCTTCGTGAACACCCCTTAACTCCACTAACAATTACCAAAGCTATTATTGTTGGATACTTGGGATTATTTTCTATCTATTGGATTTTTTGCTTCTTGAGATTCTTTGCACAACTAAAGGATACTCTTGAAATCCGGCGTTTTTACTACAATAGTCTCCATGTCACTGACAATGAAATTCAAACCATGCCATGGGCTACAATTCTTGAAAAAGTTGTTCTGCTACAAAGGTCTCAGCAACTTTGTGTGGTAAAAGATCTTTCTGCCCATGACATTGTCATGCGGTTGATGCGGAAGGAAAACTACTTAATTGGAATGCTCAACAAGGGTGTGCTAGCTTTCCCTATTTCGCAGTGGTTTCCAGGTGCTGGTCCTATAGTGACATCTGGTTCTGGTGGAACACAGAATCGATTAATACTAACCAAGACCCTTGAGTGGACTTTGAATTGGTGCATCCTGCAGAGCATGTTTGATCGAAACTTTTGTGTCAGAAGGGATTTTGTGTCAAATCCAAAGACGTTACAAAGAAGGCTCATGGTTGTTGGGCTTGCAATGCTTTTACTCTCTCCATTTCTTGTCATATTCATGCTGGTGTATCTCTTTCTGAGACATGCTGAGCAATTTTATAATCACCCTAGCACTGCATCATCTCGAAGATGGTCAAATCTGTCTAGGTGGATCTTTAGGGAATTCAATGAGGTGGACCATCTCTTCAAGCACCGGATTAATAGCAGTGTATTGCACGCATCTGATTATCTCAAGCAATTTCCTGCACCAATCATATCTATCATTGCAAAATTCATCTCTTTTGTATCGGGTGGCTTTGCTGCAGTTCTGATCATCATTGCTTTTCTTGAGGAGTCTCTACTAGAGGGCCATATACTTGGTCGGAACTTGCTTTGGTATGCTGCTGTTTTTGGAACCATAACTGCCATTAGCCGGGCTGCAATCACGAATGAGCTTCTGGTTTTAGATGCTGAAGGAGCTATGTCTATGGTGGTTCAACATACTCATTATCTGCCAAAGAGATGGCGTGGCAAAGAAAGTACTGAATCCGTCCGTGCTGAGTTTGCAACTTTATTCCAGTATACTGGAATGATGTTACTTGAGGAGATGGCCTCAATTTTCCTCACACCATACTTGCTTCTGTTTATTGTCCCAAAGCGGGTTGATGATATCTTGCAATTCATTGCTGATTTCACTGTAAATGTTGAAGGTGTTGGCCATGTTTGCAGTTTTAGCACCTTTGATTTTCAAGAACATGGAAACAGTCGTTATGGTTCCCCTTGCAATGCACCTCGTAGCCGGAGGAGTTCTCAAGGGAAGATGGAGAAATCATTGCTGAGCTTTCAGAGTAGTTATCCATCATGGGAACCTAGCGCACAGGGTAAACAGTTTTTGATAAATCTTAGAAAATTCAGAGAGGAAAAGTTACCAGTACAAGGAATCATACATGCAGCTTCCCCTCCTAGAATGTGGAGGGGTATTTCCAACACGGGAAGCAATATTGGAGACAGAAACAGGTTTATGTCCAGGGAAATGCCATACAGTACTTTTTTAACTGGCAATCACTTGGGTTCTCTGTGGTTGATTGAAGCCAATCAACACAATCATCCCTATCTCCTTGATTGGTACTATACATCTCGATCTTCTGACGTAAATCAAGGAGACGATCCTTCGGAAGCGTTTGGAGTAATAGAGCATCATTCTGGAGAGCATTGGATTCCCTCCAATATGACACACAATGAAAGTGAATATGAGGAATGCTCAAATGAGAATCGTCGAGGTTGGGCTCAATCTCATCTTGTGACTTCCACATCCGTACCCATTTTCAGGGAAAGCTTTATTCAGGATCAAAGTTATAATGGACTGACCCATACTACCAGGAGTCATTGGTGGGCTAGACACGCGCAGCAGGGTGGACAGAATCAGACAAGCTTTTTTGAGCCTCCAGATTTCAATCAGGAAAGATATAATTATTATGATAAGTTTTCTGATAGAGGGTCAGAGGAAGAAGATCGTGAACACCGCTTGTACTCTAGAGATAGTCACAGATTATCTAGAACATACACAGATGACTTGGGGGCTGGGGAATTAAATCTTCATTTTGATGATATTTATAGCAAACCTCCAGAAACCCCACCTGCAAGCTTTTGA 2577 0.4164 MFSRPRGASAFSIFKWKQPGASSLTAGLLQEDQLEIELSDYGKIPSPGSESPSGLLNGDSLNVEPISDLDLFFERLYSYYCEKGLWCIIIKWIVELLSLGFTICFSGFFLLYVDWNGLRNAKCGMDAVESGIKPCDLAKEALREHPLTPLTITKAIIVGYLGLFSIYWIFCFLRFFAQLKDTLEIRRFYYNSLHVTDNEIQTMPWATILEKVVLLQRSQQLCVVKDLSAHDIVMRLMRKENYLIGMLNKGVLAFPISQWFPGAGPIVTSGSGGTQNRLILTKTLEWTLNWCILQSMFDRNFCVRRDFVSNPKTLQRRLMVVGLAMLLLSPFLVIFMLVYLFLRHAEQFYNHPSTASSRRWSNLSRWIFREFNEVDHLFKHRINSSVLHASDYLKQFPAPIISIIAKFISFVSGGFAAVLIIIAFLEESLLEGHILGRNLLWYAAVFGTITAISRAAITNELLVLDAEGAMSMVVQHTHYLPKRWRGKESTESVRAEFATLFQYTGMMLLEEMASIFLTPYLLLFIVPKRVDDILQFIADFTVNVEGVGHVCSFSTFDFQEHGNSRYGSPCNAPRSRRSSQGKMEKSLLSFQSSYPSWEPSAQGKQFLINLRKFREEKLPVQGIIHAASPPRMWRGISNTGSNIGDRNRFMSREMPYSTFLTGNHLGSLWLIEANQHNHPYLLDWYYTSRSSDVNQGDDPSEAFGVIEHHSGEHWIPSNMTHNESEYEECSNENRRGWAQSHLVTSTSVPIFRESFIQDQSYNGLTHTTRSHWWARHAQQGGQNQTSFFEPPDFNQERYNYYDKFSDRGSEEEDREHRLYSRDSHRLSRTYTDDLGAGELNLHFDDIYSKPPETPPASF* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0176 858 Pfam Autophagy protein ATG9 63 557 IPR007241 GO:0006914
Vra3g0176 858 PANTHER AUTOPHAGY-RELATED PROTEIN 9 1 858 - -
Vra3g0176 858 PANTHER APG9 AUTOPHAGY 9 1 858 IPR007241 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0176 Vra-Chr3 2040799 2047940 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0176 K17907 - gmx:100777405 1502.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0176 3 2040799 2047940 Vra3g0176 3 2040799 2047940 ECH