Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0171 ATGTCGAACCCTCAAAATCAGAAACCATGGAAGGCGGAATACGCGAAGTCGGGGCGATCGTCATGCCGGATGTGCAAGAGCCCCATTGCCAGTGAAACGCTGCGTCTCGGCAAGATGGTCCAATCCACCAAGTTCGATGGCCTCATGCCTATGTGGAATCATGCTGCTTGCATATTGAAGAAAGCTAATCAGATAAAACTAGTTGACGACGTTGAAAACTTAGAGTCGCTTCGTTGGGAAGATCAGCAGAAGATCCGAAAATACATAGAGAGTGGCAGTGGTAGTGGCGGCAGCAGCAGTGCTGCCACAAAATCAGGCTCAAAAGCTGTCAAAGATACTGAGTGTGGTATTGAAGTTTCACAGACTTCTCGCGCTACTTGCAGGAGTTGCAGTCAAAAGATTATCAAAGGAGAGGTTCGTATATCCACTAAGCCTGATGGTCCAGGTGCAAAAGGTTTGGCTTGGCACCATGCCAAATGTCTTGTGGAATTATCCCCATCAATTGAAGTAGATAAGTTATCTGGATGGGATAGTCTCTCATCTTCTGATCAATCAGCTGTCAGTGACTTCGCCAAGAAGTGTCATCCAATGGACAAGGCGGGTGTTAGTAGTACAAACATTGAAACTGAAAAGGGTAAAGAATCCACGCAACTACGCACTTCCAAAGGTGGTACAAAACGAGGGAAAGATGCTGATAATGAGCGAAAGTCAAAAGTTGCTAAGGTCAAGGGAGATTTATCTGCGAGCAGTGAAGCATCTGTTAAGAATTATAATGAAACAGGGGAAGCATGTGATCTGGAGAAGAAAATGGAAATCCAGAGCAAAGAAATATGGGCTCTGAAAGATGATCTCAAAAAGAATGTGACAACACCAGAGTTACGTGAAATGCTGGAAGCCAATGGTCAAGACTCAACAGGATCAGAACTTGATTTACGTGACCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGGTCTTTGCCCAATATGTTCTGGCTTTCTGCGTTACTCTGGAGGAATGTACCGTTGTACTGGATACGTTTCAGAGTGGAGTAAATGTTCTTACTCTACATGCGAACCAAAACGTGTTGAAGGGAAGTGGAAAATCCCTGAAGAAACAAATAATAAATACCTTGAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCCATCACCAAGAAAATCTGCTGAAAGTCAAATTGCAACGGCTAATCAGCATCAATCATTGAAGGCTGAAAATTTCCAAGATATCAAAGTTGCTATCTGTGGATTAGCTAATGACGCCATTGAGGAATGGAAACGCAAAATTAATGCCATGGGTGGAATCTTTCATGCAAAAGTAAAGAAAGATACTAACTGCTTGGTGGTTGGTGGAGTGCTCAATGATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATTCCAATAGTCAGAGAGGACTACTTGATTGACTGCATACAGAAAAAAAAGAGACTTCCATTTGATATGTACAAGGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATTAAAGTGAAGGGACAAAGTGCTGTTCATGAGGCTTCTGGCCTACAAGAGTCTGGCCACATACTTGTGGAAGGAAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGTTACTACATTCTCCAGATAATCCAAGAAGATAAGGGGTCAGATTGCTTTTTGTTTCGTAAATGGGGTCGAGTAGGAAATGACAAGATTGGAGATAATAAACTGGAGGGTGAAATGTCAAAATCTGATGCAATCTGTTATTTCAAACGATTATTCTTTGAGAAGACTGGAAACCCTTGGGAGGCATGGGAACAAAAGACCATTCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGATTATGGTGTTAACAAACAGGTATCAAACAAGAAAAGAAATGATAATGACAGCAAACTACCCCCGTCATTAATAGAATTGATTAAGATGCTCTTCAACGTGGAAACTTATAGATCTGCCATGATGGAGTTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTAAGCAAAAGCAATATCCAAAACGGGTTTGAAGCATTGACGGAGATACAAAATCTGTTAAAACTTACTGATCCTGATCCATCAATCAAGGAAAGCTTACTTATTAATGCCAGCAACCGGTTCTTCACCATGATCCCTTCTATTCATCCACATATTATTAGGGATGAAGATGATTTTAAGTCCAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCTAGATTAGTTGGATTTGATGCCAACAATGAGGACTCAATTGATGATAGTTATAAGAAGCTCCACTGCGATATATCTCCACTTCCTCATGACAGTGAAGATTTTTGTTTAATTGAAAAGTTTCTCCATAATACTCATGCCCCTACACATACGGACTGGAGTCTTGAGCTGGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTANGGCATGGTTCTAGGTTNACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATAGCCCCTCCTGAAGCCCCCGCGACTGGCTATATGTTTGGGAAAGGGGTGTACTTTGCGGACCTGGTCAGCAAAAGTGCCCAGTATTGCTTCACTGATAAGAAAAACCCTGTTGGTCTAATGCTATTGAGTGAAGTTGCACTTGGAAACATCTATGAGCTCAAGAAAGCTAAGTATATGGATAAACCTCCCGAAGGAAAGCACTCTACCAAAGGACTGGGCAAGAAAATGCCTCAAGAATCGGAATATGCAAAGTGGAGAGGTGATGTGACTGTTCCTTGTGGCAAACCAGTGCCATCAAATGTCAAGGCTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCCCAAGTTAAGATGCAATTCTTGTTGAAGGTGAGGTTTCATCACAAGAGATGA 3024 0.414 MSNPQNQKPWKAEYAKSGRSSCRMCKSPIASETLRLGKMVQSTKFDGLMPMWNHAACILKKANQIKLVDDVENLESLRWEDQQKIRKYIESGSGSGGSSSAATKSGSKAVKDTECGIEVSQTSRATCRSCSQKIIKGEVRISTKPDGPGAKGLAWHHAKCLVELSPSIEVDKLSGWDSLSSSDQSAVSDFAKKCHPMDKAGVSSTNIETEKGKESTQLRTSKGGTKRGKDADNERKSKVAKVKGDLSASSEASVKNYNETGEACDLEKKMEIQSKEIWALKDDLKKNVTTPELREMLEANGQDSTGSELDLRDRCADGMMFGALGLCPICSGFLRYSGGMYRCTGYVSEWSKCSYSTCEPKRVEGKWKIPEETNNKYLEKWFKSQKGKKPVRILPLPSPRKSAESQIATANQHQSLKAENFQDIKVAICGLANDAIEEWKRKINAMGGIFHAKVKKDTNCLVVGGVLNDEAEMRKARRMKIPIVREDYLIDCIQKKKRLPFDMYKVEMIGEASSMVTIKVKGQSAVHEASGLQESGHILVEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSDCFLFRKWGRVGNDKIGDNKLEGEMSKSDAICYFKRLFFEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSNKKRNDNDSKLPPSLIELIKMLFNVETYRSAMMEFEINMSEMPLGKLSKSNIQNGFEALTEIQNLLKLTDPDPSIKESLLINASNRFFTMIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANNEDSIDDSYKKLHCDISPLPHDSEDFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLXHGSRXTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNIYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYAKWRGDVTVPCGKPVPSNVKASELMYNEYIVYNTAQVKMQFLLKVRFHHKR* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0171 1007 Gene3D - 108 213 IPR036957 GO:0003677|GO:0008270
Vra3g0171 1007 Gene3D - 2 107 IPR036957 GO:0003677|GO:0008270
Vra3g0171 1007 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 10 93 IPR001510 GO:0003677|GO:0008270
Vra3g0171 1007 PANTHER DNA LIGASE 50 1001 - -
Vra3g0171 1007 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 115 200 - -
Vra3g0171 1007 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 95 - -
Vra3g0171 1007 Pfam Poly(ADP-ribose) polymerase catalytic domain 802 1003 IPR012317 GO:0003950
Vra3g0171 1007 PIRSF NAD_ADPRT 3 1007 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Vra3g0171 1007 Gene3D BRCT domain 400 508 IPR036420 -
Vra3g0171 1007 SMART WGR_cls 546 630 IPR008893 -
Vra3g0171 1007 CDD parp_like 658 1002 - -
Vra3g0171 1007 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Vra3g0171 1007 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 118 189 IPR001510 GO:0003677|GO:0008270
Vra3g0171 1007 Gene3D - 792 1007 - -
Vra3g0171 1007 ProSiteProfiles BRCT domain profile. 416 506 IPR001357 -
Vra3g0171 1007 ProSiteProfiles PARP catalytic domain profile. 782 1007 IPR012317 GO:0003950
Vra3g0171 1007 Pfam Poly(ADP-ribose) polymerase, regulatory domain 658 788 IPR004102 GO:0003950
Vra3g0171 1007 CDD WGR_PARP1_like 536 642 - -
Vra3g0171 1007 Pfam BRCA1 C Terminus (BRCT) domain 421 493 IPR001357 -
Vra3g0171 1007 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 658 792 IPR036616 GO:0003950
Vra3g0171 1007 SMART BRCT_7 418 496 IPR001357 -
Vra3g0171 1007 Pfam WGR domain 546 625 IPR008893 -
Vra3g0171 1007 Gene3D - 250 322 - -
Vra3g0171 1007 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 115 189 IPR001510 GO:0003677|GO:0008270
Vra3g0171 1007 SUPERFAMILY BRCT domain 417 506 IPR036420 -
Vra3g0171 1007 MobiDBLite consensus disorder prediction 198 236 - -
Vra3g0171 1007 SUPERFAMILY WGR domain-like 514 640 IPR036930 -
Vra3g0171 1007 Gene3D - 641 791 IPR036616 GO:0003950
Vra3g0171 1007 SUPERFAMILY ADP-ribosylation 791 1006 - -
Vra3g0171 1007 SMART PADR1_2 311 364 IPR012982 -
Vra3g0171 1007 ProSiteProfiles WGR domain profile. 535 635 IPR008893 -
Vra3g0171 1007 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 50 1001 - -
Vra3g0171 1007 Gene3D - 323 383 IPR038650 -
Vra3g0171 1007 ProSiteProfiles SAP motif profile. 285 319 IPR003034 -
Vra3g0171 1007 ProSiteProfiles PARP alpha-helical domain profile. 657 775 IPR004102 GO:0003950
Vra3g0171 1007 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Vra3g0171 1007 SMART zf_PARP_3 118 192 IPR001510 GO:0003677|GO:0008270
Vra3g0171 1007 Pfam PADR1 (NUC008) domain 313 362 IPR012982 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0171 Vra-Chr3 1963914 1973538 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0171 K24070 - gmx:100815900 1752.26