Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0156 ATGGCATCCATCATCGCCGGCACCCCTACAACCTCTATCTCTCGCACAGGTCTTGTACTCAAACGACCTTTTGGGGTCTCATCCTCCACCGTTCTTGGATTGCCAGCAATGGGTAGTAGGGCAGGGAAAGTGAGATGCTCGATGGAGGAAAAACCATCCATGCAGGAAAGCAGTTCAAAGGCAGGAGTGGGAGCATCCTTGCTAGCAGCTGCATGCGCCGCAACCATGTCAAGCCCAGCCATGGCTTTGGTGGATGAGAGACTGAGCACTGAAGGGACAGGGCTTCCCTTTGGGCTTAGCAATAACCTTCTTGGTTGGATCCTGTTGGGTGTCTTTGCTCTTATATGGGCTCTCTTCTTTGTCTACACTTCCACTCTTGAAGAGGATGAAGAGTCTGGGTTGTCCCTCTAA 411 0.5182 MASIIAGTPTTSISRTGLVLKRPFGVSSSTVLGLPAMGSRAGKVRCSMEEKPSMQESSSKAGVGASLLAAACAATMSSPAMALVDERLSTEGTGLPFGLSNNLLGWILLGVFALIWALFFVYTSTLEEDEESGLSL* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0156 136 Pfam Photosystem II reaction centre W protein (PsbW) 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
Vra3g0156 136 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
Vra3g0156 136 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0156 Vra-Chr3 1768930 1769910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0156 K02721 - gmx:100306223 193.741