Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0154 ATGCAACACTTTCACACAAGATCTTCCAATGCCTCTTCCCAATCCAAGTTCGGCAAGAAACGCGGTAGCTACAACTGCGGCCGCTGCGGTCTCCCTAAGAAGGGCCATATCTGCACCATCAGTACTCCGGCCACCTCCACTTCTGCCACTCCTTCCCATTCTTCTCTCTCTGTGGTGGCATCTGCTCCTTCCTCCTTCTCCGCCGCTGGCTGCCCTCCTCTCCATCCGCGTCGTGCTCTGTCATTCGATGACGAAGAATCTGACGGCCTTGATCCATTGGAGTCTACGGCCGTGTGGCCCCATGGGGATGATCTGGATTCGTCTGGGTTGCCGGGGAATGTCCTTTGGAACGTGTTTAAGAGGCTCCCGCCCTCTGGGCTCTTAACGGCGGCGAAAGTGTCCAGAGGCTGGAGGGATATGACGAAAAGATTGTGGAAGGCGGCTGAGGAGTTAAGACTCAGGGTTCCGGCGAGTGTCCAGGTGGGTTTCGTGGCGTCGATGTTGCAGAAGTGTCCGGGGATTGTGAGTCTCTCTATTGTAATGGAAAGTGACTTGGATTCCACAATGCTGGCTTGCATTGCATTTTCGTGCCCCAATTTGATATTCTTGGAGATTTTGGTTTCTGATTCTGCAGTCAATCGAATCACCGGGACTGAGTTAGGTCGATTTGTTGCTGATAAAAAGAGCCTCAAAAGCCTTAAGATGGAAGGCTGTTGTAGCCTTGGAGGCTTCCTTCTTTGTTCTTCTAGTCTTTCTACCATTTGGCTGTCCGATCTGTACTCTCATTCTAAGATGGTTTTTAATTGTCCTCACTTGAGGGAGATTTCATTGAAGTTTTCTCATCGAGAAAATGACAGTACTGATCTTGCAACCATGGTTGAAGGTTTGGGAAGAAGTTGCCCCAGGTTGCAAAACATACGTATATATTCAATGCAGCTTTCACATACTGCAGTGCTCGCTCTTACTGCTGCTCAGCTAAGGGGGCTCCGAATGCTTTCACTTGTTTCTGGATCTGATGTTACTGATGCATCTGTTGCTGCCATTGCCTCAAGCTATCCAAATCTGGAATTGCTTGATCTCAGTGGATCCAGCGTAAGTGACAGTGGCATTAGCATGATTTGCAATGTGTTCTCTGAAACATTGACACGACTCCTTCTAGCTCTTTGCCCTAATGTGACTTCAAGTGGCATTCAGTTTGCTACTGCCCAATTGCCACATCTTGAAATTATGGACTGTGGCATGACAATATGTGAACCAGATTCTGGCAATCCAATTGCCGATGAAAATAACCACAAACTACAGAAGATGCCTATTATTACTAATCTACACCTTACAAACCAAAAGCTAATCATCAAACACAGCTGTTTAAAGAAACTTAGTTTATGGGGATGTTCGGGCTTGGATGCCTTATATTTAAACTGCACTCAGCTCAAGGATCTGAATCTAAATTCTTGTAGAAATTTGCACCCAGAGAGACTGTTGCTTCAGTGCCCTAGTTTAGAAAATGTGCATGCGTCTGGTTGTCAGGACATGCTAGTTGGGGCTATCCAAAGTCAGGTTTGCAATGCTTTTACTGATTTGGAAAACAACTCACCTTGTAAGCGATTACCTGATGGCTCCAAAAGGGTTCGGGTCCCTCATCTAGTCAATACTGAGTCGCTCAATGAAGAAACGAAAAGAAGTAGAAAGAAGAGACGACTTTGTAACGTGCTCCTGGATTGA 1722 0.4657 MQHFHTRSSNASSQSKFGKKRGSYNCGRCGLPKKGHICTISTPATSTSATPSHSSLSVVASAPSSFSAAGCPPLHPRRALSFDDEESDGLDPLESTAVWPHGDDLDSSGLPGNVLWNVFKRLPPSGLLTAAKVSRGWRDMTKRLWKAAEELRLRVPASVQVGFVASMLQKCPGIVSLSIVMESDLDSTMLACIAFSCPNLIFLEILVSDSAVNRITGTELGRFVADKKSLKSLKMEGCCSLGGFLLCSSSLSTIWLSDLYSHSKMVFNCPHLREISLKFSHRENDSTDLATMVEGLGRSCPRLQNIRIYSMQLSHTAVLALTAAQLRGLRMLSLVSGSDVTDASVAAIASSYPNLELLDLSGSSVSDSGISMICNVFSETLTRLLLALCPNVTSSGIQFATAQLPHLEIMDCGMTICEPDSGNPIADENNHKLQKMPIITNLHLTNQKLIIKHSCLKKLSLWGCSGLDALYLNCTQLKDLNLNSCRNLHPERLLLQCPSLENVHASGCQDMLVGAIQSQVCNAFTDLENNSPCKRLPDGSKRVRVPHLVNTESLNEETKRSRKKRRLCNVLLD* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0154 573 SMART LRR_CC_2 352 376 IPR006553 -
Vra3g0154 573 SMART LRR_CC_2 300 324 IPR006553 -
Vra3g0154 573 SMART LRR_CC_2 326 351 IPR006553 -
Vra3g0154 573 SMART LRR_CC_2 474 497 IPR006553 -
Vra3g0154 573 MobiDBLite consensus disorder prediction 1 20 - -
Vra3g0154 573 Gene3D - 103 144 - -
Vra3g0154 573 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 15 571 - -
Vra3g0154 573 PANTHER F-BOX/LRR-REPEAT PROTEIN 17-LIKE ISOFORM X1 15 571 - -
Vra3g0154 573 Pfam F-box domain 108 143 IPR001810 GO:0005515
Vra3g0154 573 SUPERFAMILY RNI-like 250 526 - -
Vra3g0154 573 ProSiteProfiles F-box domain profile. 104 148 IPR001810 GO:0005515
Vra3g0154 573 SUPERFAMILY F-box domain 107 153 IPR036047 GO:0005515
Vra3g0154 573 Gene3D Ribonuclease Inhibitor 425 557 IPR032675 -
Vra3g0154 573 MobiDBLite consensus disorder prediction 77 98 - -
Vra3g0154 573 MobiDBLite consensus disorder prediction 1 22 - -
Vra3g0154 573 Gene3D Ribonuclease Inhibitor 145 421 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0154 Vra-Chr3 1743831 1748891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0154 - - gmx:100792669 853.203