Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0149 ATGGCTCTTGCACTCAAGTCAAGTTGCTTCTTGCAATTGAAGAAACCTGAGGTCGGTTTCCATGTTTGTTTTTCCTCTGAGAAGGCTTTAATCTCTGTGAAGAGATACACTCCAGTGGCTGCTATGAGGACCATGGAAGTTCCGGGACTCTCCGAAACATTCACCAGACTGAAAAAAGAAGGAAAAGTGGCTTTCATACCGTATATTACAGCCGGTGATCCTGACCTTTCAACCACAGCAGAAGCACTGAAAGTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGTGTTCCATATTCTGATCCCTTGGCAGATGGTCCNGTTATCCAGGCTGCTGCTACAAGATCTCTTGCAAAGGGGACCAACTTCAATGCAATCATTTCTATGTTGAAGGAGGTTGTTCCGGAATTGTCATGTCCAATTGCATTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCTATTATAAGAGAAACGGGCGTACATGGCCTCGTGGTCCCAGATGTCCCTCTGGAGGAGACGGAGACTTTAAGGGTGGAGGCTAAGAAAAATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCAAAAAACCGAATGAAGGCCATTGTTGATGCAGCAGAAGGATTTGTGTACCTTGTGAGTTCGGTGGGGGTCACTGGAGCCCGATCATCAGTTAGTGGTAATGTTCAGTCTCTTCTGCAGGAAATTAAAGAGGCAACAACTAAACCTGTGGCTGTTGGTTTTGGAATATCAAAGCCCGAGCATGTTAAACAGGTAGCAGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCCATGGTGAAGGTGCTTGGAGAAGCCAAATCTCCTCAAGAGGGATTGAAAGAGCTGAAAGCTTTTGCCCGTTCCTTAAAGGAGGCACTTCCTTAA 936 0.4562 MALALKSSCFLQLKKPEVGFHVCFSSEKALISVKRYTPVAAMRTMEVPGLSETFTRLKKEGKVAFIPYITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLAKGTNFNAIISMLKEVVPELSCPIALFTYYNPILKRGTEKFMSIIRETGVHGLVVPDVPLEETETLRVEAKKNGIELVLLTTPTTPKNRMKAIVDAAEGFVYLVSSVGVTGARSSVSGNVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKVLGEAKSPQEGLKELKAFARSLKEALP* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0149 311 Pfam Tryptophan synthase alpha chain 54 309 IPR002028 GO:0004834|GO:0006568
Vra3g0149 311 TIGRFAM trpA: tryptophan synthase, alpha subunit 54 307 IPR002028 GO:0004834|GO:0006568
Vra3g0149 311 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 48 310 IPR002028 GO:0004834|GO:0006568
Vra3g0149 311 Hamap Tryptophan synthase alpha chain [trpA]. 60 309 IPR002028 GO:0004834|GO:0006568
Vra3g0149 311 ProSitePatterns Tryptophan synthase alpha chain signature. 94 107 IPR018204 GO:0004834
Vra3g0149 311 CDD Tryptophan_synthase_alpha 64 307 IPR002028 GO:0004834|GO:0006568
Vra3g0149 311 Gene3D Aldolase class I 49 311 IPR013785 -
Vra3g0149 311 PANTHER TRYPTOPHAN SYNTHASE ALPHA CHAIN 48 310 - -
Vra3g0149 311 SUPERFAMILY Ribulose-phoshate binding barrel 50 290 IPR011060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0149 Vra-Chr3 1689298 1693568 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0149 K01695 - gmx:732610 549.28