Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0126 ATGCTTGGAGTGAGAAAGCTCAAAACAGGGCCTGATATCCCTTTGGTTTTAAGTGTCATGGTTGCTAATTGCAATTATAGAACAGCCCAAGTTTCCAGTGGCAAAAGTGTCAGGTATATTGTTAAGTCGGCTGTCTCTTGTTTAGTTAAATCAAGTTCATCAACATTTCTTCTGGGATCAGAGAATAAATTTTCTCTTCAAGGACTATATTTCTCTAGTGCGGCTGAAAGAATCCTGGTCCATGCTCAAGACCCTGCCAAAGTTAGTTTGGAGATACAAAATGCTATCGATTTGAATCAATTAGATTATTCGTGGAAATTATTGGAGCAGCATATGCACATGGAGGGGTTTCCCAGAAAATCAGTCATCAGTAAGCTTGTAACAAGCTATGTGGACAGCCTTGATACAAAATTGCTAGGAAAGGCTTATGAGTTCGTAGAACGTGCTATTGAGAAAGGTAGACAAGATTTGTTGGAAAAGGATGTGCTAATCTACCTCAGCTTTGGCCTTGCAAAAGCCGGACTACCGGTTCCAGCATCAACCATTTTAAGAAAGATGATCGATATGGAGCATTTTCCCTCAGTCACTGCTTGGTCTGCAGTTTTAGCCCACATGTCACAAACAGCAGAAGGAAGTTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTATTCCAGAACAATAGAATAGATCCGCGTAAAAAGAGCAATGCACCTTTGATAGCCATGAAGCCAAACAGTGCTGCTTTTAGCATTGCTTTGGCAGGGTGCCTCCTATTTGAGTCATCTAGGAAGGCAGAACAGCTTCTGGATATGATGCCTCGAATTGGTGTCAAAGCAGATGCACACTTACTGATAATAATGGCACGTGTATACGAGAGAAATGGGCGAAGGGAAGAGCTCAAGAAGCTGCAAAGGCACATAGAGGAAGCCCCAAATCTAACTGATTTACAGTTTCGACATTTCTATAATTGTTTATTGACATGCCATTTGAGATTTGGGGACCTAGATTCCGCATCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCCAAATTTATGATGAATGCCGATGGAATTGACCATAACCGTTCTCCGGAATTGGCTTCTGTCCATAGTTTGAACAAGATTAAAGATTTAGATAGTTTACAAAATAACAGGTCAAATTCAAGTGCTGTATTATCTTATGAGGAGTTCTCTAAAGATAGGAACTTCTCAAAGCTTGAGGCAGAGTCCAAAGCTATACTTGATTCTTTATTATCAAAGTTGCAGATGCGGGTGGACTTGATCACAACCAAGCATGGTATATTGCAGCCAACTGAAACAATTTATGTAAAATTAGTTAAAGCTATGCTAGAAGCTGGCAAGACCAAAGATTTAGCTGTATTTCTTCTCAAGGCAGAAAGAGAAGATTCTCCATTTTCCAATGACAATTCAGCTTTGGTTCATGTTATTAACGCGTGCATCTCACTTGGATGGCTGGACCAAGCACATGATCTCCTGGATGAAATGCGTCTAGCCGGAGTTAGAACTGGTTCATCTGTATACTCCTCTCTTTTGAAAGCATATTGCAGAGCGAATAGGGTGGCAGATGTCACATCGCTTCTGAGAGATGCTAAGATAGCTGGTATCCAGCTTGACTCAAGCTCTTATGAGGCAATGATCCAATCCAGAGTTCTCCAGCAAGACACACAGGGTGCACTCCAACTTTTTAAAGAGAGGAAAGAGGCTAGAATTCCAAGAGTCACTCAACAAAACTCTGGCATGATGGCTAAAGATGGAGCGGATACTGAAGAAGCTGGGCTAATGACCAAGCTGTTACAGGAAATCAAGGAAGGGCAGAAAGTGGANTGTGGAGTGCATGACTGGAATAATGNNATCCACTTTTTTTGCAAGAAGANACTGATGCAAGATGCAGAAAAGGCTCTAAAGAAAATGAGAAGCTTAGGCCACTTACCAAATGCTCAAACTTTCCATTCTATGGTCACAGGGTATGCTGCCACTGGAGGAAAATATCAAGAGGTGACAGAGCTGTGGGGTGAGATGAAAGGTCTTGCTTCTTCTGTCTCGATGACGTTTGATCAGGAACTTCTTGATTCTGTGTTGTATACGTTTGTAAGGGGTGGATTCTTCGTTCGAGCCAATGAAGTTGTCACCATGATGGAAAAAGGAAACATGTTTATTGACAAATACAAGTACCGAATGTTGTTCTTGAAATACCATAAATCACTTTACAAAGGGAAGGCTCCAAAATTTCAGACAGAATCCCAACTAAGCAAAAGGGAAGCAGCCCTGGCTTTTAAAAGGTGGATAGGCTTGACTTGA 2355 0.4119 MLGVRKLKTGPDIPLVLSVMVANCNYRTAQVSSGKSVRYIVKSAVSCLVKSSSSTFLLGSENKFSLQGLYFSSAAERILVHAQDPAKVSLEIQNAIDLNQLDYSWKLLEQHMHMEGFPRKSVISKLVTSYVDSLDTKLLGKAYEFVERAIEKGRQDLLEKDVLIYLSFGLAKAGLPVPASTILRKMIDMEHFPSVTAWSAVLAHMSQTAEGSYLAAELILEIGYLFQNNRIDPRKKSNAPLIAMKPNSAAFSIALAGCLLFESSRKAEQLLDMMPRIGVKADAHLLIIMARVYERNGRREELKKLQRHIEEAPNLTDLQFRHFYNCLLTCHLRFGDLDSASNMVLEMLRKAKEARNSLAAAKFMMNADGIDHNRSPELASVHSLNKIKDLDSLQNNRSNSSAVLSYEEFSKDRNFSKLEAESKAILDSLLSKLQMRVDLITTKHGILQPTETIYVKLVKAMLEAGKTKDLAVFLLKAEREDSPFSNDNSALVHVINACISLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCRANRVADVTSLLRDAKIAGIQLDSSSYEAMIQSRVLQQDTQGALQLFKERKEARIPRVTQQNSGMMAKDGADTEEAGLMTKLLQEIKEGQKVXCGVHDWNNXIHFFCKKXLMQDAEKALKKMRSLGHLPNAQTFHSMVTGYAATGGKYQEVTELWGEMKGLASSVSMTFDQELLDSVLYTFVRGGFFVRANEVVTMMEKGNMFIDKYKYRMLFLKYHKSLYKGKAPKFQTESQLSKREAALAFKRWIGLT* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0126 784 Gene3D Tetratricopeptide repeat domain 431 595 IPR011990 GO:0005515
Vra3g0126 784 Gene3D Tetratricopeptide repeat domain 169 402 IPR011990 GO:0005515
Vra3g0126 784 Gene3D Tetratricopeptide repeat domain 598 780 IPR011990 GO:0005515
Vra3g0126 784 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
Vra3g0126 784 Pfam PPR repeat 633 660 IPR002885 -
Vra3g0126 784 Pfam PPR repeat 494 519 IPR002885 -
Vra3g0126 784 Pfam PPR repeat 324 350 IPR002885 -
Vra3g0126 784 TIGRFAM PPR: pentatricopeptide repeat domain 525 557 IPR002885 -
Vra3g0126 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Vra3g0126 784 PANTHER OS10G0422566 PROTEIN 16 783 - -
Vra3g0126 784 PANTHER BNAC05G43320D PROTEIN 16 783 - -
Vra3g0126 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0126 Vra-Chr3 1420905 1424868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0126 525 753 Miscellaneous Gene Families AT4G11690 21.552 2.10e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0126 - - gmx:102661989 1337.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0126 3 1420905 1424868 Vra3g0126 3 1420905 1424868 ECH