Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0123 ATGTCTGGACTGATTGAAGGGCTTCCTGATGCTGTTGCAATTAGGTGCCTTGCACGGGTTCCTTTCTACCTTCACCCGGTGTTAGAGCTTGTCTCTCGATCTTGGCAAGCAGCTATTCGAAGCTCTGAACTATTTAGAGCTCGGCAGGAGGTTGGTTCAACTGAGGATCTGTTATGTGTCTGTGCTTATGATCCAGAGAACTTATGGCAGCTGTATGACCCTTTGCGAGATCTCTGGATCAGACTTCCTGTTCTTCCATCAAAGATCAGGCACCTTTCCCACTTTGGTGTAGTTTCCACTGCTGGAAAGTTGTTTGTGATTGGTGGTGGAAGTGATGCTGTTGATCCGTTGACTGGGGACCAAGATGGTTGTTTCGCAACGGATGAAGTCTGGTCATATGACCCTGTAGTCCGACAGTGGGCCCCTCGTGCACCAATGCTTGTCCCACGTTCTATGTTTGCATGCTGTGTTTTGGACGGGAAAATTGTTGTAGCCGGGGGCTTCACTAGCTGCAGAAAATCAATATCTCAAGCAGAAATGTATGATCCTGAGAAGGATGTCTGGATTCCAATGCCCGATCTTCATCGCACTCATAATTCGGCCTGTTCAGGGGTAGTGATTGGTGGAAAAGTGCATGTACTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGCCCGGGTGGATTGTTGAGGAATGTGCATGGCTTCAGGGTCCGATGGCAGTCGTCCGTGATGCGCTCTATGTGATGAGCCATGGATTAATCCTCAAACAGGACAAAGAAGTGAGAAAAGTTGTGGGTTCGGCATCTGAGTTTCGAAAGAGAATTGGATTTGCGATGGCTGGACTAGGTGATGAGTTATACGTGATTGGAGGCGTCATTGGCCCTGATAGATGGAATTGGGAGATTAGGCCATTATCCGAAGTTGATGTTCTCACACTTGGAAATGAGAGACCAACTTGGCGCCAAGCAGCTCCAATGACTTGGTGTCATGGTACTATTCTTGGTTGTACACTGCTGAGAATTTAG 1038 0.4769 MSGLIEGLPDAVAIRCLARVPFYLHPVLELVSRSWQAAIRSSELFRARQEVGSTEDLLCVCAYDPENLWQLYDPLRDLWIRLPVLPSKIRHLSHFGVVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEVWSYDPVVRQWAPRAPMLVPRSMFACCVLDGKIVVAGGFTSCRKSISQAEMYDPEKDVWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGPGWIVEECAWLQGPMAVVRDALYVMSHGLILKQDKEVRKVVGSASEFRKRIGFAMAGLGDELYVIGGVIGPDRWNWEIRPLSEVDVLTLGNERPTWRQAAPMTWCHGTILGCTLLRI* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0123 345 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 2 345 - -
Vra3g0123 345 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP30 2 345 - -
Vra3g0123 345 SUPERFAMILY Kelch motif 61 331 IPR015915 GO:0005515
Vra3g0123 345 Pfam Kelch motif 149 194 IPR006652 GO:0005515
Vra3g0123 345 Pfam Kelch motif 278 330 IPR006652 GO:0005515
Vra3g0123 345 Pfam Kelch motif 92 146 IPR006652 GO:0005515
Vra3g0123 345 SMART kelc_smart 161 208 IPR006652 GO:0005515
Vra3g0123 345 SMART kelc_smart 103 160 IPR006652 GO:0005515
Vra3g0123 345 Gene3D - 54 338 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0123 Vra-Chr3 1407089 1411142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0123 8 188 Miscellaneous Gene Families AT4G33900 30.000 1.27e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0123 - - gmx:100800954 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0123 3 1407089 1411142 Vra3g0123 3 1407089 1411142 ECH