Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0122 ATGGATTCGGAAACCAAGAAGGACATAGAAGTTGCTCCGGCACTCATCGCCGTTCACCCCGACCAATGCTCCGTAGCCGTCGCCGTCGGTCATCACCTTCGCGTCTTCGACCTCCTTGCCGGTTCCGCAGTTTCCTTAACGGATGACTCCGATGCCTCCCCCTTCCACACCGATAACATCAGAGCCATTCGCTTCGGCGCCAAAGGAAAACTATTCGTCTCCGCCGGTGACGATAAAACTGTCAAGGTCTGGTCAACACAGTCATGGCGTTGCATCACCAGCGTGTCCTCCGAGAAGAGAGTGTCCGCAGTTGCAATTAGCGACGACGGAACCTACGTTTGCTTCGCCGACAAATTCGGCCTTGTTTGGATTGTGGATCTCGATCCTCCGTTACGCGATAAGAAACCGGCACCTCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCCCCTCATGGTCGCTTCATTTTAAGTGCTGATCGTGATTTCAAAATTCGTGTTACTTGTTTTCCCAAGAATCCCTTAAATGGAGCTCACCAGATACAAAGTTTCTGTCTCGGTCATACAGAGTTTGTTTCCTGCCTTGCTTTCGTTCAGGCTCAGGAATGCCCTCAAGGTCTTCTTCTCTCTGGCAGTGGTGATGCCACAGTTCGGTTGTGGAATGTCGACTCTGGAGCACTTCTAGATACTTGTGAGGTTGCAACTAAGGCAGGACTTTTAGAGTCTGATGACAAAGCAGAGGAGCATGACCATGCTGTTACTGATTTATGCACTGTCCTTGATGGTTTGCTTGTTGCGGTGGCCATTCAGAGTTTGCAAGGAATAATATTGTTGAGTTGCAATGTTTCTGCAAAAACTCTTTCTGTTGCCAAGGTAGTTTCAATTGCTGGAGAAGCCTTTGTCCCTACATGCTTGGCGAGCCCCTCTGCAGGGAAATTGTGGATGGTTACTGGTGTCTCTACTTTACCTGGTTGCAATTATCCCGCGTTGGCTCGTGTAAAAGTAATTTCTGGTATAGATGATGAACAAGAACCAGTTGTTATGGGAGACGATGGCATACCTGGGGGAGAAAAGCTGCTAGAAACGTTGCAAGGAACAGCATCCGTTGATGACAATGCTTTTTTAGCAGCAGCTGAGGCTGTCAAAACAGCAATGGGTCAGCTGTTGATAAAAAAACAATACCCTTCAGAGAATAGAGAATCTAGGAAGAAATGCAGAAATGATAGAAAACTCAAGGGTTAG 1251 0.474 MDSETKKDIEVAPALIAVHPDQCSVAVAVGHHLRVFDLLAGSAVSLTDDSDASPFHTDNIRAIRFGAKGKLFVSAGDDKTVKVWSTQSWRCITSVSSEKRVSAVAISDDGTYVCFADKFGLVWIVDLDPPLRDKKPAPLLSHYCSIITSLEFSPHGRFILSADRDFKIRVTCFPKNPLNGAHQIQSFCLGHTEFVSCLAFVQAQECPQGLLLSGSGDATVRLWNVDSGALLDTCEVATKAGLLESDDKAEEHDHAVTDLCTVLDGLLVAVAIQSLQGIILLSCNVSAKTLSVAKVVSIAGEAFVPTCLASPSAGKLWMVTGVSTLPGCNYPALARVKVISGIDDEQEPVVMGDDGIPGGEKLLETLQGTASVDDNAFLAAAEAVKTAMGQLLIKKQYPSENRESRKKCRNDRKLKG* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0122 416 PANTHER WD40 REPEAT PROTEIN 4 14 413 IPR028884 GO:0036265
Vra3g0122 416 Gene3D - 14 97 IPR015943 GO:0005515
Vra3g0122 416 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 22 408 IPR028884 GO:0036265
Vra3g0122 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 228 - -
Vra3g0122 416 Pfam WD domain, G-beta repeat 141 170 IPR001680 GO:0005515
Vra3g0122 416 Pfam WD domain, G-beta repeat 188 224 IPR001680 GO:0005515
Vra3g0122 416 Pfam WD domain, G-beta repeat 56 85 IPR001680 GO:0005515
Vra3g0122 416 ProSitePatterns Trp-Asp (WD) repeats signature. 211 225 IPR019775 -
Vra3g0122 416 MobiDBLite consensus disorder prediction 396 416 - -
Vra3g0122 416 SMART WD40_4 133 172 IPR001680 GO:0005515
Vra3g0122 416 SMART WD40_4 88 126 IPR001680 GO:0005515
Vra3g0122 416 SMART WD40_4 180 224 IPR001680 GO:0005515
Vra3g0122 416 SMART WD40_4 47 85 IPR001680 GO:0005515
Vra3g0122 416 Gene3D - 98 321 IPR015943 GO:0005515
Vra3g0122 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 233 IPR001680 GO:0005515
Vra3g0122 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Vra3g0122 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 88 - -
Vra3g0122 416 SUPERFAMILY WD40 repeat-like 16 270 IPR036322 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0122 K15443 - gmx:100786310 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0122 3 1403072 1406055 Vra3g0122 3 1403072 1406055 ECH