Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0113 ATGGCTTCTCCCTTCTCCACCCACTGTCACCTTCCTTCTTTCTCTTCTTCTAACCATTTCCCTCTTCCATCTCCATCATCTTCATCATCTTCTTCTTTTTCTTTTATTCCTCTTCACCACTTCTCCAAATCCTCTCTTGGTTCTGTGTTCTCTGATACTAACGACAAACAAGAGATAAGATGCAGAGCTATATCCAAGTCACGAACGCATGAATATTCAGACATATTTCAGGGTGGCCTAGCAGTGTTGAAGTTGCCTGAGATTAATGTGGAAGATGACATAGAAGAGGAGCAAGACATTGGGGTATTGGTGGCAAAAGAGATCAAGAAGAGAGTGGACTCTATCAAATCAATATTGAGTTCATTGGAAGATGGAGAGATAACTGTGTCTGCTTATGACACTGCTTGGGTTGCTCTGGTAAAAGATGTTAATGGAAGTGGTACCCCTCAGTTTCCAACGAGTCTAGAATGGATAGCAAAAAACCAACTTGAGGATGGATCATGGGGTGATCAGGAATTGTTTTCAGCCCATGATCGGATCATAAACACGTTAGCTTGTGTTATTGCATTAAAATCATGGAACATGCATCCTGAAAAGTGTGAAAAAGGAATGGCATTTTTCAAGGAGAATCTTAACAAGCTTGAGAATGAGAATGCGGAGCATATGCCAATTGGGTTTGAAGTAGCTTTCCCATCACTTCTTGACCTGGCTCGTGAGTTGGAGATCGATGTGCCTGAAAATTCCCCTATCCTGAACAAGATCTTTGCAATGAGAAACGTAAAACTCACAAGAATACCAAGAGAGATGATGCATAAAGTGCCCACAAGTCTGCTTCATAGCTTGGAAGGGATGTCAGACCTGGACTGGAATTCACTTCTCAAACTTCAGTCTCAAGACGGGTCTTTCTTGTTTTCTCCTTCCTCCACAGCTTTTGCTCTCATGCAAACCAAAGATCAAAATTGCCATGACTACTTGAATCAAATAGTCCAGAGGTTCAATGGTGGAGTTCCAAANGTGTATCCAGTGGATTTGTTTGAACATATTTGGGTGGTTGATAGGCTAGAACGCCTAGNAATNTCTCGGTATTTTCANCAAGAGATCAAAGACTGTTTGAGCTATGTTAATAGATATTGGACCGAGAAAGGTATTTGTTGGGCAAGAAATTCAAATGTTGAAGACATCGATGACACGGCAATGGGTTTCAGATTACTGAGATTGCATGGCCACCAAGTTTCAGCTGAGGTGTTCAAGCACTTTGAGAGGGATGGTGAATTTTTCTGTTTTAAGGGACAAAGCACACAAGCTGTGACAGGAATGTTCAATCTGCTAAGGGCTAGTCAAGTAATGTTCNCCGGTGAGAAGATTCTAGAAGATGGGAAGAAGTTCTCCTCAAAATTTTTGAAGGAGAANAGAGAAGCAAATGAGCTAGTAGATAAATGGATCATAATGAAAAACTTAGCAGAAGAGGTGGCATACGCATTGGACNTGCCATGGTATGCAAGTATGCCTCGAGTGGAGACAAGATTCTACATTGATCAATACGGCGGTGAGAGTGACGTATGGATTGGCAAGACCCTTTATAGGATGCCCTATGTGAACAACAACAACTATCTGGAGCTTGCTAAATTAGATTACAACAATTGTCAAGCAATGCATCTAATGGAGTGGGGGAGGATTCAGAAGTGGTACTCAGAATCTAGATTGGCAGAGTTTGGAATGAACAGAAGAACTCTTCTNTTGGCTTATTTTCTGGCAGCTGCGAGCATATTTGAACCAGAAAAATCTCATGTGAGGCTTGCTTGGGCCAAAACCACAGTCTTACTTCAGACCATAACATCCTATGTTAGTGATGCAGAAATGAGAAAAACTTTTATGAAAAATTTCAGTGACTACATTAGCAGGCGTGACTACTCCATTGGCTGGAGGTTCAACAGGAACAGAACAGGACATGGACTTGTGGAAACTTTGGTTACGACCATAGATCAAATATCATGGGATATACTTGTTTCTCAAGGTCATGAAATCGGTTATGATATGCATCGCATGTGGGAAAAGTGGCTTTCAAGTTGGCACGAGGAAGGAGACAAATGTGAAGGACAAGGTGAGCTTTTAGCGCAGATAATAAACCTATGTGGCGGGCATTGGATTTCAGAGGATCAAATGTTCGATCCTCAATATGAGACTCTTCTTCAACTCACTAACTCACTCTGTCATACACTCTATTGTCATCAAAAGGACAAGGAATCGGAGAGCATGATATTCCCAGAAGTTGAGTCGCAGATGCAAGAACTGGTGCAATTGGTGTTCCAAAAATCTACATCTGGCATTGATTTCAACATCAAGAACACTTTTCTCACTGTGGTCAAGACTTATTACTATGCAGCTTTCTGTGATGCAAGGACCACCAACTTCCACATTGCCAAAGTTCTGTTTGATAAAGTTATTTAA 2448 0.4118 MASPFSTHCHLPSFSSSNHFPLPSPSSSSSSSFSFIPLHHFSKSSLGSVFSDTNDKQEIRCRAISKSRTHEYSDIFQGGLAVLKLPEINVEDDIEEEQDIGVLVAKEIKKRVDSIKSILSSLEDGEITVSAYDTAWVALVKDVNGSGTPQFPTSLEWIAKNQLEDGSWGDQELFSAHDRIINTLACVIALKSWNMHPEKCEKGMAFFKENLNKLENENAEHMPIGFEVAFPSLLDLARELEIDVPENSPILNKIFAMRNVKLTRIPREMMHKVPTSLLHSLEGMSDLDWNSLLKLQSQDGSFLFSPSSTAFALMQTKDQNCHDYLNQIVQRFNGGVPXVYPVDLFEHIWVVDRLERLXXSRYFXQEIKDCLSYVNRYWTEKGICWARNSNVEDIDDTAMGFRLLRLHGHQVSAEVFKHFERDGEFFCFKGQSTQAVTGMFNLLRASQVMFXGEKILEDGKKFSSKFLKEXREANELVDKWIIMKNLAEEVAYALDXPWYASMPRVETRFYIDQYGGESDVWIGKTLYRMPYVNNNNYLELAKLDYNNCQAMHLMEWGRIQKWYSESRLAEFGMNRRTLLLAYFLAAASIFEPEKSHVRLAWAKTTVLLQTITSYVSDAEMRKTFMKNFSDYISRRDYSIGWRFNRNRTGHGLVETLVTTIDQISWDILVSQGHEIGYDMHRMWEKWLSSWHEEGDKCEGQGELLAQIINLCGGHWISEDQMFDPQYETLLQLTNSLCHTLYCHQKDKESESMIFPEVESQMQELVQLVFQKSTSGIDFNIKNTFLTVVKTYYYAAFCDARTTNFHIAKVLFDKVI* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0113 815 SFLD Terpene Cyclase Like 1 N-term - Enzymatic 104 528 - -
Vra3g0113 815 SFLD Terpene Cyclase Like 1 N-term 104 528 - -
Vra3g0113 815 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 92 811 - -
Vra3g0113 815 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 299 519 IPR008930 -
Vra3g0113 815 Gene3D - 131 343 - -
Vra3g0113 815 Gene3D - 114 546 IPR036965 GO:0010333|GO:0016829
Vra3g0113 815 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 131 412 IPR008930 -
Vra3g0113 815 SUPERFAMILY Terpenoid synthases 533 798 IPR008949 -
Vra3g0113 815 Pfam Terpene synthase family, metal binding domain 538 697 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vra3g0113 815 Gene3D Farnesyl Diphosphate Synthase 548 815 IPR008949 -
Vra3g0113 815 Pfam Terpene synthase, N-terminal domain 288 494 IPR001906 GO:0010333|GO:0016829
Vra3g0113 815 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 92 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0113 Vra-Chr3 1273637 1281309 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0113 K04120 - gmx:100784193 1366.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0113 3 1273637 1281309 Vra3g0113 3 1273637 1281309 ECH