Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0108 ATGAGTGTTCAGCTATCAGCTTTATGGGTCCCCAACTCTCCGTCAATTCCCACAAACTTCCTTCCCAACCGTCGAAGATTCTCCGTATCGGCTCTCTCATCCCAATCCCCCACTATTCAGATAATTGGCGTGGGAGGCCCCAGTTGGAGGGATAATGGATATGGAAATCCCAACGGCAACTTATTTGATGGGTTTCAAGGAGAGAGTGATCATTGGAGTGACCTGGACACTGATCTTTATCACTGGACAAAGACATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCCATGTCCACAAGTCATCCACAGATGGATGTATGGCTTGGAAATAGAAAGAGAATTTTGGTCTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTACTAGGAATGGAACAAAGGTTGTCTTCTCCAATGGGAAGCTTGGAATGGGAACAATGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATATTAAGCGTAGAGCCAAAGGGCTACTTCCTCGTGCGATTCGAGCTGGAATAGTTGGATACCCTAATGTCGGAAAATCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCCAGGCCAGGAGTTACAAGAGAGTTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGATTCTCCCGGGATACTCCCAATGCGAATCAGTGATCAGTCAGCGGCTATAAAACTCGCCATATGTGATGATATCGGAGAGAGGTCCTATGATGTGGCTGATGTTGCTGCAATTCTTGTGCAGATGCTCACAAAGCTTCCCACAGTAGGAGGAGATACTCTTCGTAAACGGTACAAAATTGATGTAGATAGTAAAAATGGTAAAATATTCATAGAGAAGCTTGCAGTTCGAATATTTAATGGAGATGTTCATCAAGCAGCATTCCGTGTCCTAGCAGATTTTAGAAAAGGAAAGTTTGGTTGGACGGCACTGGAGAGGCCCTCTAGGTGA 1098 0.4508 MSVQLSALWVPNSPSIPTNFLPNRRRFSVSALSSQSPTIQIIGVGGPSWRDNGYGNPNGNLFDGFQGESDHWSDLDTDLYHWTKTLRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDVWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGKLGMGTMKLGRLAKELAADVNIKRRAKGLLPRAIRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLTKLPTVGGDTLRKRYKIDVDSKNGKIFIEKLAVRIFNGDVHQAAFRVLADFRKGKFGWTALERPSR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0108 365 TIGRFAM GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF 89 361 IPR019991 -
Vra3g0108 365 Gene3D - 267 355 IPR023179 -
Vra3g0108 365 PANTHER DAR GTPASE 3, CHLOROPLASTIC 12 365 - -
Vra3g0108 365 CDD YlqF 91 262 - -
Vra3g0108 365 PRINTS GTP1/OBG GTP-binding protein family signature 209 229 IPR006073 GO:0005525
Vra3g0108 365 PRINTS GTP1/OBG GTP-binding protein family signature 255 270 IPR006073 GO:0005525
Vra3g0108 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 328 IPR027417 -
Vra3g0108 365 Pfam 50S ribosome-binding GTPase 209 297 IPR006073 GO:0005525
Vra3g0108 365 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1 12 365 - -
Vra3g0108 365 Gene3D - 89 262 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0108 Vra-Chr3 1168543 1173436 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0108 K19828 - gmx:100784201 681.404