Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0100 ATGGAAGCAACGCGATTCTCCGCTAATCACTTCCTCCCACACTCCTTCCAAACCAAACACAACGCTTCCAGAGAAAGAAGATACGTAAAATGCATCAACGGAATTGGTACTAGGGTTTCGCTTTTCACAATTCCCGCATTCAGCACAAGGATTTCTCCTTCGCGGAACCGGACTCTTTCTGTTAACTTCTCCGATAGGCTCCGGAGTGATTATGCACGCGTCGACGCTCCGAAGGATGAGCTTCCGAACGAGGACGTTGTTACCGCCATTCGCGGAGGGGAAACGACTGTTGCGTTGTCTCCGGAGTTTGATAAGTCGGTAACCTCGCAATTGAAACCTGTAATGTTCAGAAACAGGTTTCTGAACTTCGTGCGGTTGGGTTCCGTGATAAACGGCGCGGCTGAATCGTTTTTCAAGAGCGAAATTAGGAGGAGGTTGTTCGTGACGGCGGTGCTGATTGTGATTAGTCGCGTTGGTTATTTTATTCCTCTTCCTGGGTTTGACAGAAGGTTGATACCGGAAGACTACCTGAGCTTTGTGTCAGGATCATCTGTTGATGAACTTGGTGATTTCTCCGCTGAGCTCAAGCTATCTATTTTCCAGCTTGGTATTAGTCCTCAGATAATAGCGTCCATTATTATGCAGGTACTCTGTCATGTTGTCCCTTCGCTAGTAAAGCTACGAAAAGAAGGTCTGGATGGGCATGAAAAGATTAAGAGTTATATATGGTGGATGTCATTTGGCTTTGCAATTTTGGAAGCTTTAATAGTTTCTTGCTACTCACTTCCATATTCAATTTATGCTGCCAGTTACAGGGTCAAACATGTAATGGTGACATCAGTTTTATTGGTTTGTGGTGCAATGACTATTACATGGATATGTGATACGATATCAGAATCTGGATTTGGTCAAGGCTCGTCTTTAATCATATGTGTGGGAATACTTACGGGGTATATGGAAACATTATACAAGATGCTTACTCAGCTTTCAGTGAGTGCTGTGAGCTGGTGGCCATATGTGCTTGCCGTGTTGGGTATCTTCACCGTTGTCACTATGTGGGCAGTTGTAGTAACAGAAGGTTGTAGGAAAGTAAAGCTGCAGTACTATGGTTTTAAACTTGCTTCTGCAGCAAGAGAGCAATCGCCTATTACAGAAGTGGAGCCTTATATTCCTTTCAATATTAATCCAGCAGGGATGCAGCCTATTCTTACCACCTCTTACCTCTTGGCACTTCCAAGCATTCTTGCAAGTCTGCTGAGTTCACCTTTTTGGGAGCACGTCAAGGAAATATTGAACCCTGAAACTTCTGTCGGTGCTGAGCCATGGGTGTACTATTCCATATATGCTTTTTTTGTCTTCCTGTTCAATATATTTGACATTGCTAACATGCCAAAGGAAATTGCGGATTATTTAAATAAGATGGGTGCGAGAATACCAAACATAAAGCCTGGGAAGGCTACCATAGAATACCTCACCAAGGTTCAGGCATCCACACGATTTTGGGGGGGGCTACTGTTAAGTGTTCTGGCCACTACATCAAGTGTTCTTGACCACTATTTGAGGCGTGTCAATGCTGGGTTTGCCATTGGTTTTACGTCAGTTCTAATTATTGTCGGTTCCATTATTGAACTCAGAAGATCATATCAAGCATATAATGTGATGCCAAGCTTAAGTAATGCCTTGAGACGATATGGTGTATAA 1701 0.4356 MEATRFSANHFLPHSFQTKHNASRERRYVKCINGIGTRVSLFTIPAFSTRISPSRNRTLSVNFSDRLRSDYARVDAPKDELPNEDVVTAIRGGETTVALSPEFDKSVTSQLKPVMFRNRFLNFVRLGSVINGAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPEDYLSFVSGSSVDELGDFSAELKLSIFQLGISPQIIASIIMQVLCHVVPSLVKLRKEGLDGHEKIKSYIWWMSFGFAILEALIVSCYSLPYSIYAASYRVKHVMVTSVLLVCGAMTITWICDTISESGFGQGSSLIICVGILTGYMETLYKMLTQLSVSAVSWWPYVLAVLGIFTVVTMWAVVVTEGCRKVKLQYYGFKLASAAREQSPITEVEPYIPFNINPAGMQPILTTSYLLALPSILASLLSSPFWEHVKEILNPETSVGAEPWVYYSIYAFFVFLFNIFDIANMPKEIADYLNKMGARIPNIKPGKATIEYLTKVQASTRFWGGLLLSVLATTSSVLDHYLRRVNAGFAIGFTSVLIIVGSIIELRRSYQAYNVMPSLSNALRRYGV* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0100 566 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 120 565 IPR002208 GO:0015031|GO:0016020
Vra3g0100 566 Pfam SecY 198 544 IPR002208 GO:0015031|GO:0016020
Vra3g0100 566 Gene3D SecY subunit domain 130 556 IPR023201 -
Vra3g0100 566 PRINTS Preprotein translocase SecY subunit signature 146 164 - -
Vra3g0100 566 PRINTS Preprotein translocase SecY subunit signature 197 217 - -
Vra3g0100 566 PRINTS Preprotein translocase SecY subunit signature 238 261 - -
Vra3g0100 566 PRINTS Preprotein translocase SecY subunit signature 273 298 - -
Vra3g0100 566 PRINTS Preprotein translocase SecY subunit signature 299 322 - -
Vra3g0100 566 PRINTS Preprotein translocase SecY subunit signature 397 416 - -
Vra3g0100 566 PRINTS Preprotein translocase SecY subunit signature 442 464 - -
Vra3g0100 566 PRINTS Preprotein translocase SecY subunit signature 530 548 - -
Vra3g0100 566 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTIC 120 565 - -
Vra3g0100 566 SUPERFAMILY Preprotein translocase SecY subunit 128 551 IPR023201 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0100 57 566 Miscellaneous Gene Families AT2G31530 75.097 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0100 - - gmx:100803256 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0100 3 1056439 1064226 Vra3g0100 3 1056439 1064226 ECH