Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0087 ATGTTGCATGAGCAGAGGATGGGTCTGATGGAGTTCCGACCAGGGAATTTCGTCTACGATGCTGAGGATATTCCATTTGGGACTGTCTGGTGGTTCATTTATGCTGGAATTTCTTGCTTGCTTGTTCTCTTTGCTGGGATTATGTCTGGTCTCACTCTTGGATTAATGTCTCTGGGTCTCGTTGACCTTGAGATTCTCCAGCAGAGTGGTTCCTCCACCGAGAAGAAACAAGCTGCTGCTATTTTGCCGGTTGTTCAGAAGCAGCATCAGTTGCTTGTCACCTTGCTCCTTTGTAACGCCTGTGCCATGGAGGCACTTCCAATTTACCTTGACAAAATTTTTCATCCGTTTGTAGCAGTACTGTTATCTGTGACTTTTGTTCTCGCTTTTGGAGAGGTTATCCCACAAGCTATATGCACGAGATATGGGCTCTATGTTGGTGCTAATTTTGTGGGACTCGTACGTGTTCTGATGATCATCTGTTATCCTATTGCTTTTCCTATTGGAAAGGTTCTGGATGTTTTACTTGGTCATAGTCATGCATTATTTAGACGAGCACAGTTGAAAGCCCTTGTCTCAATCCATAGCCAAGAGGCTGGTAAAGGAGGTGAACTCACTCATGACGAGGCAACAATTATCAGCGGAGCATTAGATCTCACGGAGAAGACTGCCGAGGAGGCCATGACACCAATTGAATCTACATTTTCCTTGGATGTGGCTTCCAAATTGGACTGGGAAGCAATTGGGAAAATTCTTTCACGAGGCCATAGTCGTGTTCCTGTATACAGTGGAAACCCCAAAAATATAATTGGACTCTTACTAGTGAAGAACCTTCTTACTGTAAGAGCTGAAACAGAGACCCCGGTCAGTGCTGTTTCCATCCGGAGAATTCCAAGAGTTCCAGCAGATATGCCTCTATATGATATCCTCAACGAGTTTCAAAAAGGAAGCAGTCATATGGCAGCTGTAGTCAAGGTTACACGAGAGACAAAGTACCCTCTGGCAACTGGTAACATTGAGAAATCCAAGGATGAAGAAGTCATAAAGCAGAGTTCTCAACTAACTATGCCATTACTAGCCAGGTTTTACGAGAAATCAGAAAAGGTTGTCAATATTGACAAACTCTCTAAGCATGCTGCAGAACAACAATTTCAGAAGGATGTCACAGCAACAAATGGTTCCCACCACTCTCTTGACAATGTTGACGATGGGGATGAAGTTATTGGCATCATTACCTTGGAAGACGTGTTTGAAGAACTCCTTCAGGAAGAAATTGTGGACGAGACTGATGTGTATATTGATGTACATAGAAGAATACGTGTGGCTGCTGTAGCAGCTGCTACATCTGTGGCACGGGTTCCTTCTGGCCGAAAGTTGGCAGGTCAAAAGCCTGTAGCAATTCAGAATCAGGGGAATTGA 1419 0.4412 MLHEQRMGLMEFRPGNFVYDAEDIPFGTVWWFIYAGISCLLVLFAGIMSGLTLGLMSLGLVDLEILQQSGSSTEKKQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEVIPQAICTRYGLYVGANFVGLVRVLMIICYPIAFPIGKVLDVLLGHSHALFRRAQLKALVSIHSQEAGKGGELTHDEATIISGALDLTEKTAEEAMTPIESTFSLDVASKLDWEAIGKILSRGHSRVPVYSGNPKNIIGLLLVKNLLTVRAETETPVSAVSIRRIPRVPADMPLYDILNEFQKGSSHMAAVVKVTRETKYPLATGNIEKSKDEEVIKQSSQLTMPLLARFYEKSEKVVNIDKLSKHAAEQQFQKDVTATNGSHHSLDNVDDGDEVIGIITLEDVFEELLQEEIVDETDVYIDVHRRIRVAAVAAATSVARVPSGRKLAGQKPVAIQNQGN* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0087 472 Gene3D - 209 338 IPR046342 -
Vra3g0087 472 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 15 466 IPR045095 GO:0010960
Vra3g0087 472 ProSiteProfiles CNNM transmembrane domain profile. 27 209 IPR002550 -
Vra3g0087 472 SUPERFAMILY CBS-domain pair 213 422 IPR046342 -
Vra3g0087 472 Gene3D - 339 428 IPR046342 -
Vra3g0087 472 PANTHER BNAC05G01850D PROTEIN 15 466 - -
Vra3g0087 472 CDD CBS_pair_CorC_HlyC_assoc 223 324 IPR044751 -
Vra3g0087 472 Pfam Cyclin M transmembrane N-terminal domain 37 208 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0087 Vra-Chr3 940734 947270 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0087 K16302 - gmx:100777230 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0087 3 940734 947270 Vra3g0087 3 940734 947270 ECH