Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0071 ATGATGACAGACGACGAACTGTTACAGAAACTTGAAGACTTAACCATCAACGCCCACCATCACCAGTTGGAGACTCTCCGTTCGATCCTTCTTCACAATGCCACCGTGCGCTATCTTCAACCCTTCTTCAAGAACGCTCCTCTTCCTCTTGATCACTCCACTTTCACACGTCTCCTGCCTCTCTCTTCTTATCAAGATTACGTTCACTACATTAACCTCATGGCAGATGGAAAAGATGACCCCTTTCTCTCCGTTGACCCTCTCCGTTGCTTCTTTTACAGTTCGGGAACAAGTTCGAGCACCACGAGACCGAAATTGATCCCTTACTTCGATTCAAGCCTTTCTAAAGCTGCCTCCTTTATTGGTCACCGAGGCAGTATTGCTGTTCGACAAAGGGTATTCCCTCCTAGACCTGAAGTGAACAAGATCCTATGGTTTCTCTATGCTGACGATACAACTACTACTAAATGTGGCTTGAAAGTCATGGCTGCTTCCACATACCCTTTGCAAAGTGGTAATGCTACCCCTCAGCAACTTGCTGCTTTTTCCAGTCCCCTAGAAGTGATTCTTGGATCTCATGTTGAGCATCAAATGTACTGCCACCTTCTATGTGGCCTCAGGAATCTTGATGTTATAGATGGAATCACAACCCCTTATGCTATAGGCTTGATCAAAGCATTTGGTCTTCTGGAGTCCAAGTGGGGGCAACTGTGTGATGATCTTGACCATGGATTTCCGTGTAATGAAATTTCTGAGGGGGCAATGAGGGAAGCTGTGACTAAGACACTTGGTGGACCTCAGCCACAACTGGCAAATAGAATAAGATTAATCTGTGAAGGTAACAACTGGGGTGGAATTGTGTGTAGATTGTGGCCAAACACTCGTTATATCAGGTGTGTTACCACTGGAAGCATGAAGCAATACTACCAAAAGCTCAAATACTATGCAGGAGAGGTACCTATTTTAGGAGGAGATTACTTTGCTTCAGAATGCTGTGTTGGTTTAAATTTGGACATGATGCAACCCCCTGAGACAACACGGTTTGTGATATTTCCAACTTTTGCCTACTTTGAGTTTCTTCCATTTAACATGAATGAGGACAATGTTAGCAAAGAAACAGTGGACCTTTGCAGTGTGGAGGTTGGGAAGATGTATGAAGTGGTTGTTACTACTTACAGAGGATTTTATCGCTACCGTTTGGGCGATATAGTGAGAGTTGTTGGTTTCCATAACTCATCTCCAGAAGTGGAGTATGTGATGAGAGCACCTAAAAATCCTGCTGAGATTGTGACTGAGAAAGACTTGATTTCAGCTGTTGAAAATTTTCAACTTTCACTTAGAGATGCTATGAATATTGAGATTGTTGAGTATGCAAGTTTCTTGGACCAGGGGTCACTGCAGAAACAGTTGAAGGTATTTGTGGAAGTTCAAGATGCATCTAATTTTCTGGAGGACAAGCTAGAGGAATCAATTAAAGTTTTTAGAAGTTGTATGTCCACTCTCGAGAGTGGCTTGGGAGCTATATACAAGGTGCAGAGGGATAAAGGTAAACTAAGAAATTTACTGTTGTTCATAGTAAGGTCTGGAGCTTTTGATCAATTATCAGACTTAGCCATTCATAATGGAACATCAGCTAGTCAATATAAACCACCCAAGATTATAAGGAATCATGAAGTTGTCAAACTCTTGGAAAATTTAGCCATCGTGACAGTGTCGTTTGATGGTTAA 1728 0.4236 MMTDDELLQKLEDLTINAHHHQLETLRSILLHNATVRYLQPFFKNAPLPLDHSTFTRLLPLSSYQDYVHYINLMADGKDDPFLSVDPLRCFFYSSGTSSSTTRPKLIPYFDSSLSKAASFIGHRGSIAVRQRVFPPRPEVNKILWFLYADDTTTTKCGLKVMAASTYPLQSGNATPQQLAAFSSPLEVILGSHVEHQMYCHLLCGLRNLDVIDGITTPYAIGLIKAFGLLESKWGQLCDDLDHGFPCNEISEGAMREAVTKTLGGPQPQLANRIRLICEGNNWGGIVCRLWPNTRYIRCVTTGSMKQYYQKLKYYAGEVPILGGDYFASECCVGLNLDMMQPPETTRFVIFPTFAYFEFLPFNMNEDNVSKETVDLCSVEVGKMYEVVVTTYRGFYRYRLGDIVRVVGFHNSSPEVEYVMRAPKNPAEIVTEKDLISAVENFQLSLRDAMNIEIVEYASFLDQGSLQKQLKVFVEVQDASNFLEDKLEESIKVFRSCMSTLESGLGAIYKVQRDKGKLRNLLLFIVRSGAFDQLSDLAIHNGTSASQYKPPKIIRNHEVVKLLENLAIVTVSFDG* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0071 575 Pfam GH3 auxin-responsive promoter 10 557 IPR004993 -
Vra3g0071 575 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 2 571 IPR004993 -
Vra3g0071 575 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.6-RELATED 2 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0071 Vra-Chr3 782188 785008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0071 8 570 EF-hand Containing Proteins AT1G23160 32.465 1.08e-94 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0071 K14487 - gmx:100786829 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0071 3 782188 785008 Vra3g0071 3 782188 785008 ECH