Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0069 ATGGCGATTAAAGAAGATGTGGAAGATGGCACGCTGAATGGAATAAGAGAGCCACTTGTGGGTGAACAGAAGGACAATGTTGTCCAAGCAACCAAAGGGCATCCATGGATGGTTTACTTTAGTACATTTGTTGCTGTCTGGGGATCTTATGAATTCGGAACATGTGTTGGATATTCATCTCCCACTCAAGATGCTATCACAAGGGATCTCGGTCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCCATCTTGTCTTTTGGGGCAATGGTTGGTGCAATAACTTGTGGACCTATTGCTGATTTTATTGGACGTAAAGGGGCAATGAGAGTGTCCAGTGTTTTCTGTGTTGGAGGCTGGCTTATGATTTACTTTGCTGAGGGCCCACTTCCTTTGGACATTGCGAGGATAGCAACAGGGTATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTCATAGCAGAAATTGCACCAAAAGAACTCCGTGGGACTCTGACTACCTTAAATCAGTTCATGATTGTTTCTGGTGTGTCAGTGTCGTTCATAATTGGAAATGTACTTTCATGGAGGGCTTTAGCTTTAACTGGCATCATTCCCTCTGCTATATTGCTTTTGGGTCTGTTTTTCATTCCGGAGTCTCCGAGATGGTTGGCCAAGAGAGGACGCCAAAAAGATTTTGTGGCAGCACTGCAAATACTTCGTGGAAAAGATACTGATATATCTGAGGAGGCAGAGGAAATTCAGGACTATATAACTACATTGGAGCAGCTTCCAAAATCCAGTCTGCTGGAGTTGTTTCATCGAAGATATTTGCGCTCTTTAACTATTGGAATAGGCCTTATGATCTTCCAGCAGCTTGGGGGCATCAATGGTGTTTGCTTTTATGTCAGCAGTATTTTTGACCAAGCAGGATTTTCTCCCGCCATTGGGACAATATCATATGCGTGCCTTCAGGTTGTGGTCACAGGTCTTGGAGCAGCCTTCATAGATAAAGCTGGAAGGAAGCCCCTTCTTCTATTATCGGCATCAGGATTGGTGGCAGGATGCATATTTGCAGCAGTTGCATTCTATCTCAAGGTCCACGAGGTGGGTGTTGCGGCAGTTCCAGCACTTGCAGTCACAGGCGTACTGGTCTACGTAGGATCATTTTCAATAGGAATGGGAGCAATTCCATGGGTTTTGATGTCCGAGATATTTCCTGTGAATATTAAAGGGGTGGCAGGAAGCGTGGCCACATTAACGAACTGGTTTGGTTCATGGTTATGCTCCTACACTTTCAACTTCCTCATCAGCTGGAGCTCCTATGGTACCTTCATTCTTTATGCAGGAATTAATGCATTCGCTATATTATTTATAATTGTTGTGGTGCCCGAAACGAAAGGCAAGAGCTTGGAACAATTACAAGCAGCCATTAACTCATAG 1422 0.443 MAIKEDVEDGTLNGIREPLVGEQKDNVVQATKGHPWMVYFSTFVAVWGSYEFGTCVGYSSPTQDAITRDLGLSLAEYSLFGSILSFGAMVGAITCGPIADFIGRKGAMRVSSVFCVGGWLMIYFAEGPLPLDIARIATGYGMGVFSYVVPVFIAEIAPKELRGTLTTLNQFMIVSGVSVSFIIGNVLSWRALALTGIIPSAILLLGLFFIPESPRWLAKRGRQKDFVAALQILRGKDTDISEEAEEIQDYITTLEQLPKSSLLELFHRRYLRSLTIGIGLMIFQQLGGINGVCFYVSSIFDQAGFSPAIGTISYACLQVVVTGLGAAFIDKAGRKPLLLLSASGLVAGCIFAAVAFYLKVHEVGVAAVPALAVTGVLVYVGSFSIGMGAIPWVLMSEIFPVNIKGVAGSVATLTNWFGSWLCSYTFNFLISWSSYGTFILYAGINAFAILFIIVVVPETKGKSLEQLQAAINS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0069 473 TIGRFAM SP: MFS transporter, sugar porter (SP) family 39 466 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra3g0069 473 PRINTS Sugar transporter signature 132 151 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra3g0069 473 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra3g0069 473 PRINTS Sugar transporter signature 373 394 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra3g0069 473 PRINTS Sugar transporter signature 396 408 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra3g0069 473 Pfam Sugar (and other) transporter 73 469 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra3g0069 473 Gene3D MFS general substrate transporter like domains 31 473 IPR036259 -
Vra3g0069 473 PANTHER - 34 472 - -
Vra3g0069 473 PANTHER SUGAR TRANSPORTER ERD6-LIKE 7 34 472 - -
Vra3g0069 473 CDD MFS_GLUT6_8_Class3_like 39 466 IPR044775 GO:0008643|GO:0051119
Vra3g0069 473 ProSitePatterns Sugar transport proteins signature 1. 325 342 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra3g0069 473 ProSiteProfiles Major facilitator superfamily (MFS) profile. 37 460 IPR020846 GO:0022857
Vra3g0069 473 SUPERFAMILY MFS general substrate transporter 31 467 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0069 Vra-Chr3 772556 776336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0069 1 472 Organic Solute Cotransporters AT5G18840 57.411 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0069 K03444 - gmx:100785248 818.15