Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0063 ATGAAGCGAGTGTGGAGATTCTCTTCACACGCAACCGGTGTTCAGTTGTCACTCTTCCAATCCCATTTCAATGGATTCTCCCAACCCAAACGCATTCCCTCCTTCTCCACCGTGCTATCTTATCGCCAGCTCAACACGGTGTCAGACACGTTCTCTCACCTCATTCCATTGTTCACCGTTCAGAGCATTTTGGACTACAAGTATGACGATCTCAGTAGCCGCTACCCCAAGGGATATGTGTTCTCGGAACTTATGTATCAATTGAAATCAAATCCTTCCCTTGCTCTTCAGGTGTTTAACTGGAGAAGGAAAAGATGTAGTGCTGAAAACCCTATGGATACGAATGAGTACGCAAAGGGTATAATAGCTGCAGGTAGATCTGGGAATGTTCATTTTGCTATTAAGCTCTTTGAGGAGGCTTCTACCAAAGGTGTCAAGACGACTAGGACTTACAATGCGCTAATGAGTGCCTTCTCGGTCAATGGTCTTGCTGATCGCTGTCAGTCCTTGTTTTGTGATCTGAAGAGGGATTTAACTTGCGATCCTTCTATTGTCACATACAACATTCTCATATCTAGTTTTGGTGGCTTGATGCTGGTTGATCACATGGAAGCAACATTCCGTGAGATTGGAAAGTTAGACCTTGCCATGAATATCAAGACTTATAATAGCTTAATTGCTGGATATATCACAGCTTGGATGTGGGATGATATGGAAAAGGTGTTTCAAATGTTGAAGTCGAGCCCTGTTCAGCCTAACATAAAAACCTACCTGCTAATGCTTCGTGGGTATGCAAATTCAGGTAACCTGGAAAAGATGGAAGAGACGTACTCCATTGTAAGGGATCATGTAAATGAACATGAAATTTCATTAATCAGAAATATGATATGTGCCTATTATAGAAGTTCGGAAGCAGATAAACTTAAGAAGATAGAGTTGCTATTGAAGTTTATTCCAGAAGAGGAGTACAAACCATGGTTAAATGTGTTGATGATTACACTCTATGCCAAGGAAGACTTGTTAGAGAAGATGGAGAATGCTCTAAATAAGGCATTTAAAGATGGAACATCTATTAAAAACATGGGTATCTTGAGATGCATAGCTGCAACTTATTATCGGTGCAATGCTGTAGAAAAGCTAGAAAATTTTGTGAGACGTGCTGAAATATCTGGGTGGAGTACCTGCCGCTCCTTATATCATTGTAAACTGGTCATGTATGGGTCACAGAAGCCCTTACATGAATTGTATCGTGTCCTTGAGAGGATGGAAAATGCCAAACTTGCTTGTACGAAGAAAACGTTATGGATAATGCACAAAGCTTACAGCAACCGTGGCCAGAGTCCCATGGTTTTGAAAACACTGGGGCTAATGTTCAAACATGGTTACGAATTTCCTTTGGACGCATTTCCATCATGA 1416 0.4131 MKRVWRFSSHATGVQLSLFQSHFNGFSQPKRIPSFSTVLSYRQLNTVSDTFSHLIPLFTVQSILDYKYDDLSSRYPKGYVFSELMYQLKSNPSLALQVFNWRRKRCSAENPMDTNEYAKGIIAAGRSGNVHFAIKLFEEASTKGVKTTRTYNALMSAFSVNGLADRCQSLFCDLKRDLTCDPSIVTYNILISSFGGLMLVDHMEATFREIGKLDLAMNIKTYNSLIAGYITAWMWDDMEKVFQMLKSSPVQPNIKTYLLMLRGYANSGNLEKMEETYSIVRDHVNEHEISLIRNMICAYYRSSEADKLKKIELLLKFIPEEEYKPWLNVLMITLYAKEDLLEKMENALNKAFKDGTSIKNMGILRCIAATYYRCNAVEKLENFVRRAEISGWSTCRSLYHCKLVMYGSQKPLHELYRVLERMENAKLACTKKTLWIMHKAYSNRGQSPMVLKTLGLMFKHGYEFPLDAFPS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0063 471 PANTHER EXPRESSED PROTEIN 59 470 IPR044179 GO:0003729
Vra3g0063 471 TIGRFAM PPR: pentatricopeptide repeat domain 221 253 IPR002885 -
Vra3g0063 471 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Vra3g0063 471 PANTHER OS05G0407900 PROTEIN 59 470 - -
Vra3g0063 471 Gene3D Tetratricopeptide repeat domain 59 213 IPR011990 GO:0005515
Vra3g0063 471 Gene3D Tetratricopeptide repeat domain 214 286 IPR011990 GO:0005515
Vra3g0063 471 Gene3D Tetratricopeptide repeat domain 292 463 IPR011990 GO:0005515
Vra3g0063 471 Pfam PPR repeat family 218 266 IPR002885 -
Vra3g0063 471 Pfam PPR repeat family 147 194 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0063 75 339 Miscellaneous Gene Families AT4G11690 25.080 1.11e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0063 - - gmx:100792116 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0063 3 703228 709707 Vra3g0063 3 703228 709707 ECH