Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0060 ATGAGTTCCACAGAAGTTGCAGCACCAGGAAAGAAGGGTGGAAGGGGCAAGCCCAAGACCACAAAATCTGTTTCTCGTTCCTCCAAAGCTGGTCTACAATTCCCTGTTGGCCGTGTGGCTCGTTACCTCAAGGCTGGTCGCTATGCACAGCGCGTTGGATCCGGTTCTCCGGTTTACCTCACTGCGGTTCTTGAATACCTTGCTGCTGAGGTTTTGGAACTTGCTGGAAACGCTGCCAGGGACAACAAGAAGACGAGAATTATTCCGAGGCATATTCAGCTTGCGGTGAGAAACGATGAGGAACTGAGCAAACTCATGGGATCTGTAACCATAGCTAATGGTGGGGTTCTGCCCAAAATTCATCAGAATTTGCTGCCGAAGAAAGCTGGCAAGGGGAAAGTTGAAATTGGATCTGCTAGTCAGGAGTTTTAG 432 0.4954 MSSTEVAAPGKKGGRGKPKTTKSVSRSSKAGLQFPVGRVARYLKAGRYAQRVGSGSPVYLTAVLEYLAAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELSKLMGSVTIANGGVLPKIHQNLLPKKAGKGKVEIGSASQEF* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0060 143 MobiDBLite consensus disorder prediction 1 30 - -
Vra3g0060 143 Pfam C-terminus of histone H2A 100 133 IPR032454 -
Vra3g0060 143 CDD H2A 21 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra3g0060 143 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra3g0060 143 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra3g0060 143 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra3g0060 143 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra3g0060 143 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra3g0060 143 PANTHER HISTONE H2A 10 141 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra3g0060 143 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra3g0060 143 Pfam Core histone H2A/H2B/H3/H4 12 97 IPR007125 GO:0003677
Vra3g0060 143 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
Vra3g0060 143 PANTHER HISTONE H2AXA-RELATED 10 141 - -
Vra3g0060 143 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
Vra3g0060 143 Gene3D Histone, subunit A 9 136 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0060 Vra-Chr3 675076 675830 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0060 K11251 - gmx:100818215 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0060 3 675076 675830 Vra3g0060 3 675076 675830 ECH