Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0059 ATGAAAAAACTGCTTCTGTTTCCCTTTTCTCTACCTTCAACCCTTAAACTCCAATCACTGTTTAACCTTCAACACTATAAATGGCTATCCTCTTCTTTGCAATTTCCAAAGGAACTCAAATGGAACTCCAAAACCAACGTCATAATCACACACCCAACACTTGTTGTGATGGAATCATGTTCTTCCATGTATCAACTAAGGCAGATTCAAGCGCGCATGACCCTTACTGGCTTAATCACTCACACCTTCCCCCTTAGCAGGCTCCTAGCTTTCTGCGCCCTCGCCAATGCCGGTGACCTCCGCTACGCCCACCGTCTTTTCTGCCGTATTCTTGAGCCCAACACCTTTATGTGGAACACCATCATTCGAGGCTATAACAAGGCCCGAATTCCCGCCATGGCCTTCTCTTTCTTCCTCGATATGTTTCGACGCCGCGTTCCGTTCGACCCCAGAACCTTCGTCTTCACGCTCAAGGCCTGCGAACACTTTTCCATGGCTCCACAGGGGGAGTCCGTGCACTCGCTTGCTCGGAAAACTGGGTTTGATTCCGAGTTGCTCGTGCGGAATGGGTTGGTTCATTTTTACGCTGTTCGGGGTTGGTTGAACCACGCGCGCGGGGTGTTTGATGAAATGCCTGTTAAGGATGTTGTTACTTGGACCACGATGATTGATGGGTATGCGGCGTGCAACTGTTCTGATGTGGCAATGGAGTTATTTGGTTTGATGTTGGAGGGTGATGTTGAGCCCAATGAGGTGACGCTGATTGCGGTGCTTTCAGCTTGCTCACATAAGGGTGACCTTGGTATGGGGAAAATGATTCATGAAATTATGGAGAAGAAGAATGTGAGGTGGGGTTTGAGTTTACACAATGCTTTGTTGGATATGTATGTGAAATGTGGATGTTTGGTGGCTGCTAGGGAGGTTTTTGACAGAATGGAAAGTAGGGATGTTTTCTCTTGGACAAGCATGGTCAATGGGTATGCTAAATGTGGTGACTTGGAGTCTGCTAGGAGGTTCTTTGAGCAAACTCCTCAGAAAAACGTGGTATGCTGGAGTGCGATGATTGCAGGATATTCTCAGAATGACAAACCTAAGGATTCATTGAAATTGTTTCATGAAATGCTTGGGGAAGGTTTTGTTCCGGGGGAGCACACTTTAGTGAGTGTGCTCTCTGCTTGTGGCCAACTAAGTTGCTTTAGTTTGGGCCATTGGATACATCGGTATTTTGTTGACCAAATAAGAATACCGATGAGTGTTACTTTGAAAAATGCAATTATAGATATGTATGCCAAATGTGGAAGCATAGATGCGGCTGCTGAAGTCTTCAGTGCAATGTCGGAGAGAAACCTGGTTTCTTGGAATTCTATCATTGCAGGCTATGCTGCCAATGGTCGAGCAAAACAAGCTATTGAAGTTTTTGATGAGATGAGATGTATGGGCTTTAAACCGGATGATATTACATTTGTGAGTTTGTTGACAGCTTGCAGTCACGGTGGCTTAGTTTCTCAAGGTAAGGAATACTTTGACATCATGGAAAGAAAATATGGGATAAAACCAAAAAAGGAACATTATGCTTGCATGATTGATCTACTAGGTAGAACTGGCTTCCTAGAAGAAGCTTACAAGTTAATAAAAAGCATGCCAATGCTGCCTTGTGAGGCTTCTTGGGGTGCCCTTTTAAGTGCTTGTAGAAAGCACCACAATGTTGAGCTGGCCACTTTGTCTGCTTCTAATCTTCTAAGCTCGGATCCAGAAGATAGTGGTGTTTATGTGCTTTTGGCAAATATTTGGGCTAATGAGAGAAAATGGGGTGATGTGAGGAGGGTGCGAAGTTTGATGAGAGACAAAGGTGTGAAGAAGATTCCTGGTCATAGTTTAATAGAGATAGATGGCGAATTCAAAGAGTTTTTGGTGGCAGATGAATCACACCCTCAATCCGAGGAGATCTACAGAGTACTGGATGACATACTTTTGTTATCAAAATTGGAAGATTCGGGCTGTGACTGCGACTTATAA 2016 0.4444 MKKLLLFPFSLPSTLKLQSLFNLQHYKWLSSSLQFPKELKWNSKTNVIITHPTLVVMESCSSMYQLRQIQARMTLTGLITHTFPLSRLLAFCALANAGDLRYAHRLFCRILEPNTFMWNTIIRGYNKARIPAMAFSFFLDMFRRRVPFDPRTFVFTLKACEHFSMAPQGESVHSLARKTGFDSELLVRNGLVHFYAVRGWLNHARGVFDEMPVKDVVTWTTMIDGYAACNCSDVAMELFGLMLEGDVEPNEVTLIAVLSACSHKGDLGMGKMIHEIMEKKNVRWGLSLHNALLDMYVKCGCLVAAREVFDRMESRDVFSWTSMVNGYAKCGDLESARRFFEQTPQKNVVCWSAMIAGYSQNDKPKDSLKLFHEMLGEGFVPGEHTLVSVLSACGQLSCFSLGHWIHRYFVDQIRIPMSVTLKNAIIDMYAKCGSIDAAAEVFSAMSERNLVSWNSIIAGYAANGRAKQAIEVFDEMRCMGFKPDDITFVSLLTACSHGGLVSQGKEYFDIMERKYGIKPKKEHYACMIDLLGRTGFLEEAYKLIKSMPMLPCEASWGALLSACRKHHNVELATLSASNLLSSDPEDSGVYVLLANIWANERKWGDVRRVRSLMRDKGVKKIPGHSLIEIDGEFKEFLVADESHPQSEEIYRVLDDILLLSKLEDSGCDCDL* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0059 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 346 IPR002885 -
Vra3g0059 671 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 47 328 - -
Vra3g0059 671 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 327 662 - -
Vra3g0059 671 SUPERFAMILY TPR-like 162 342 IPR011990 GO:0005515
Vra3g0059 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Vra3g0059 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Vra3g0059 671 Pfam E motif 566 628 IPR046848 -
Vra3g0059 671 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 47 328 - -
Vra3g0059 671 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 327 662 - -
Vra3g0059 671 TIGRFAM PPR: pentatricopeptide repeat domain 289 317 IPR002885 -
Vra3g0059 671 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Vra3g0059 671 TIGRFAM PPR: pentatricopeptide repeat domain 451 484 IPR002885 -
Vra3g0059 671 TIGRFAM PPR: pentatricopeptide repeat domain 423 450 IPR002885 -
Vra3g0059 671 TIGRFAM PPR: pentatricopeptide repeat domain 318 342 IPR002885 -
Vra3g0059 671 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Vra3g0059 671 Pfam PPR repeat 289 316 IPR002885 -
Vra3g0059 671 Pfam PPR repeat 524 548 IPR002885 -
Vra3g0059 671 Pfam PPR repeat 318 343 IPR002885 -
Vra3g0059 671 Gene3D Tetratricopeptide repeat domain 53 212 IPR011990 GO:0005515
Vra3g0059 671 Pfam E+ motif 635 657 IPR046849 -
Vra3g0059 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Vra3g0059 671 Gene3D Tetratricopeptide repeat domain 269 399 IPR011990 GO:0005515
Vra3g0059 671 Pfam PPR repeat family 346 393 IPR002885 -
Vra3g0059 671 Pfam PPR repeat family 449 496 IPR002885 -
Vra3g0059 671 Pfam PPR repeat family 113 160 IPR002885 -
Vra3g0059 671 Pfam PPR repeat family 214 262 IPR002885 -
Vra3g0059 671 Gene3D Tetratricopeptide repeat domain 423 635 IPR011990 GO:0005515
Vra3g0059 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0059 Vra-Chr3 672544 674886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0059 103 657 Glycoside Hydrolase AT3G49170 33.571 1.01e-96 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0059 - - gmx:100790541 1090.87