Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0043 ATGATGGAGGAAGAAGAAGACCAGCAAAAGCTTCCAGATCTGGTGAAGGAGCTAGTTCACCGCTTGCTCTCCCAAAACCTCCCATCCAATTCCCCGCCTCTAAACCCTAACTCCTCCGAATTCCGTAACTCTCTCCGCTACGCCCTCCGCATCCTCTCCAGCCGCCTCACTCCCTCCGTCGCTCCCGACGCCGCAGCCATCGCCGACTCCATCAAGCGCCGCCTGGCCACTCACGCTCGTTCCGCGGACGCCCTCTCCTTTGCCGACCTCTTCTCCAAATTCGCATCCAAAGCCCAAAGCGTCAACAATAAATGGGCCGTCATCTACCTCCTAAAAATCATCTCCGAAGATCGCCACAAGACCGCCGCCATCCCCGCCACCACCACACCTCTCTTGCCCAACCTCGCTATCTCTGAACCCGCTTCCAACAAGGGCTGGAGCAACGGCGTTTTGCTCGTCTCCAAGGATCCCGAGAACCGCCGCGAAGTCGCGTTTCGGGAGTTCGTGAATTTGGTCAAGGAAGAAAACGAGGTGTTGGAAGAGGTTATCGTCAAGGACGTGCTCTATGCTTGCCAGGGGGTCGATGGTAGGTTTGTGAAATTCGAGAGTGATAGTAAGCGTTATGTGATACCCGATTCGTTTAGGGTTCCGAGAGCCACTAGGAGTATGGTTCATAACCTTTGTGAATTGGGTGGTTTGTTTCGGAAGGTTAGTGGTTACATTTCGCAGAGTATGGATCGGTTTCCCAATGAAGATGTGGGAACCGTGGGACAAGCTTTTTGTTCCGCTTTGCAGGATGAGCTCAGTGAGTACTACAAGTTGTTGGCGGTTCTTGAGGCTCAGGCTTCGAACCCGATTCCTTTGGTGTCCGAATCTGCGAGTTCTGGGAACTATCTATCGCTGAGGAGATTAGCGGTTTGGTTGGCTGAGCCAATGGTGAAGATGAGGCTGATGGCGGATTTGGTTGAGAAGTGTAGGGTTTTGCGCGGCGGGGCTATGGCGGGGGCGATTCATTTGCACGCACAGCATGGTGATCCGATGGTTCATGAGTTTATGAGGAGGTTGTTGCAGAGAGTGTGTTCTTCGCTGTTTGAGATGGTGAGGAGGTGGGTTTTGGAAGGGGAGTTGGAGGATATATTTTCTGAGTTTTTCATTGTTGGGCAGCCTGTTAAAGCTGAATCACTTTGGAGAGAAGGGTATAGGCTTCACCATGCGATGCTTCCTTCGTTCATTCCGCCTTCACTTGCGCAGAGGATCTTGAGGACTGGCAAGTCGATTAATTTTCTTCGCGTTTGTTGTGAGGATCGCGGTTGGGCGGATGCTGCGACTGAGGTTATCACTGATAATGAAGTGACAGCAAGAAGAGGTGGTTTTGGGTATGGGGAAACCGATACCCTTGAGTTATTGGTAGATAAAGCTGCAAAAAGAATCGACAAGCATTTGTTGGATGTGATTTTCAAGAGGTACAAGTTCAAAGAACACTGTCTTGCAATTAAGCAGTATTTGTTGCTTGGCCAAGGTGATTTTGTGCAGTATCTTATGGATATTGTGGGACCTGACCTCTCTGAGCCAGCTAACACTATTAGCTCTTTCAAACTTTCGGGATTGCTGGAAACCGCAATTCGAGCATCTAATGCTCAGTATGAGGATCCTGACATTTTGGATAGGCTCAGGGTTAAAATGATGCCGCATGAGAGCGGTGATAGAGGCTGGGATGTATTTTCGTTGGAATATGATGCAAGGGTTCCACTTGATACAGTGTTCACAGAGTCTGTGATGGCAAGGTATTTAAGAATTTTTAATTTTCTTTGGAAGCTTAAAAGAGTGGAACATGCGCTTACTGGTGCCTGGAAAACCATGAAACCAAACTGCATTACTTCTAATTCCTTTACCAGATTGCAACATGCAGTAAAGATGCAGTTAGTTTCAACATTGAGGCGCTGTCAGGTTCTTTGGGTTGAAATTAATCACTTCATTTCAAACTTACAATATTATATAATGTTTGAAGTGCTGGAGATATCATGGTCAAATTTTTTGGCGGAAATTGAAGTAGCCAAGGATCTTGATGATCTACTTGCAGCTCATGAGAAATATCTACATTCTATTGTAGAGAAATCTCTCCTTGGAGACCTTTCCCAGTCTCTTTACAAGTCACTACTTGTAATATTTGATCTTATATTACGTTTTCGGAGCCGTGCTGATCGATTGTATGAAGGTATTCATGAGTTACAAGCAAGAATCACTGAATCCTCCCAATCCTCTCGAGACCAGAATAAAACACGATCACGAAAGCAATTGAATGATAAAAATGCAGATACAGGATCCTGGATTGTAGATGGGAGAAAAGCACTAACACAACGTGCTGGTGAATTTCTACGAAATATGGGACAAGATCTTGATGCAATTGCTAAGGAGCGGTTGTGTCCTAGCGTGTAG 2436 0.4688 MMEEEEDQQKLPDLVKELVHRLLSQNLPSNSPPLNPNSSEFRNSLRYALRILSSRLTPSVAPDAAAIADSIKRRLATHARSADALSFADLFSKFASKAQSVNNKWAVIYLLKIISEDRHKTAAIPATTTPLLPNLAISEPASNKGWSNGVLLVSKDPENRREVAFREFVNLVKEENEVLEEVIVKDVLYACQGVDGRFVKFESDSKRYVIPDSFRVPRATRSMVHNLCELGGLFRKVSGYISQSMDRFPNEDVGTVGQAFCSALQDELSEYYKLLAVLEAQASNPIPLVSESASSGNYLSLRRLAVWLAEPMVKMRLMADLVEKCRVLRGGAMAGAIHLHAQHGDPMVHEFMRRLLQRVCSSLFEMVRRWVLEGELEDIFSEFFIVGQPVKAESLWREGYRLHHAMLPSFIPPSLAQRILRTGKSINFLRVCCEDRGWADAATEVITDNEVTARRGGFGYGETDTLELLVDKAAKRIDKHLLDVIFKRYKFKEHCLAIKQYLLLGQGDFVQYLMDIVGPDLSEPANTISSFKLSGLLETAIRASNAQYEDPDILDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMARYLRIFNFLWKLKRVEHALTGAWKTMKPNCITSNSFTRLQHAVKMQLVSTLRRCQVLWVEINHFISNLQYYIMFEVLEISWSNFLAEIEVAKDLDDLLAAHEKYLHSIVEKSLLGDLSQSLYKSLLVIFDLILRFRSRADRLYEGIHELQARITESSQSSRDQNKTRSRKQLNDKNADTGSWIVDGRKALTQRAGEFLRNMGQDLDAIAKERLCPSV* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0043 811 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 33 121 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Vra3g0043 811 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 141 805 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Vra3g0043 811 Gene3D - 492 793 IPR042241 -
Vra3g0043 811 Pfam Gamma tubulin complex component N-terminal 184 487 IPR041470 -
Vra3g0043 811 Coils Coil 261 281 - -
Vra3g0043 811 Pfam Gamma tubulin complex component C-terminal 493 759 IPR040457 GO:0043015
Vra3g0043 811 MobiDBLite consensus disorder prediction 748 773 - -
Vra3g0043 811 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 33 121 - -
Vra3g0043 811 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 141 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0043 Vra-Chr3 426191 431520 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0043 K16570 - gmx:100784710 1416.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0043 3 426191 431520 Vra3g0043 3 426191 431520 ECH