Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0033 ATGGAACATTTCAGCCATATCCACCCTCTTCTGTTAAAGCAAGAAAAGATAGATAACAACAACCTAGTCCTTTGCTCAGCTTGTGAAAACCCAATTTCAGGTCCTGTCTTCAGCTGCGACAAATGCAACTATATCCTTCACAAAACATGCGCAGAAATGGCACGCCATGTCAAACACCCATTTCACCCTCAACACCCCCTTGTTCTCCTTTCCACTTCCCCTTATGAGGGACGTTACATATGTGATTCCTGTAGAGGCCTCTTCCGAAACTTCGTGTACCATTGTTATATCTGCAGCTATGACCTTGACGTCTCATGTGCTTCTCAATGCAACCCAGATGATGGCCATAAGCACGAGTTCATGTCAGTGACAAATCCACAATCGTTTGTTTGTTATGCTTGTGGCTTGCAAGGAAACGAGGGTCTCGCTTGCCTATGCACCATTTGTCAGATATGGGTTCATTCTAGCTGTGCTGAATTGCCTCTTGCTGTTAGAATAAAAAACCATGACCACCCTTTGAAGCTCACTTATGACCTTCATCACATTTATGGTTTCTGGGGTAGCATAACTTGCGGTGTTTGTAATGGAGCAATGAGTGCAGCTTTTGCTGGTTACTTTTGTTCAACGTGCAGATTTCCCGTTCATTTGAAATGTCTACAAGAAGATTTAAGAGATGAGTGGGAGGCCGTAGCAGAGGATGAGAAATCATCCACGTACTATGAAACTGAGGAGTCCTTGGATATTGATTTTACTTATAGTTTCTTTGGTCATGAACATTTGTTGAAGCTGAAGGATGAAGAGAGTGATCAGCGATATTCTGGTAAACTCTGTGATGGGTGTAACCAACCCATCATGCCACCTTTATTTTCTTGTGAAGAAGAAAATTGTGGCTTCATTTTGCACCAAAGTTGTGTTGAATTACCAAGAACAATGCTGCATCCGTTTCATGCACACCCTCTGACTCTTCTACCCAAGGCACCAAATTATGATGGCATTTATAGGTGCGATGGATGCAAAAGATTGAGCAATGGTTTTGTGTATCGTTGTGATGTGTGTCAATTCGACCTTGATGTTTGTTGTGGTTCTCTTCAAGAGAGAATTGAACATGAAAGTCACATGCATCCCTTGGTCCTCAAGAAGACGACCATTGCTAGGCAATGCAAAGGTTGTCATCGTTGGTCGAAGCATGTGTTTGTGTGTGAAGTTTGTGAGGATTTTGCCATTGATTGTGGATGTGCTACTCTACCGCGTGGAGCATGGTGCATGTACGACAAGCATCCTCTAAGTCTAAACTATTTTGCTGAAGAGGGTTTGAGGGAATATGAATGTGGTATTTGCAATGAAAAAACTGGTCCGAAGCGATGGTTTTATTACTGCGATGACTGTGATTATGGTGCTCATCCTTATTGTGTTGAAGGCAAGTCTAGGCTAGTGAAGTTCGGAAGCAGTTTCCAATATGATGTTCACTCACACCCTCTTGCTTTGGTTGAAGAAACTGATCAAAACAGTAAATGTGAAGCCTGTGGTGAAAGCTGCAATGGCTGGACACTTGAATGTGGACAATGCAAAATCTACTTTCATCGTGAAGGACAGTGTTTTTGGAAACAATTTAAGAAGAGCGCCAAGTATTTGGAGTTGTCAGGAATTACGAGACACAGGTACGCAGCAAATGTGTTAGCCTCCACGCCCAATATATAA 1698 0.4252 MEHFSHIHPLLLKQEKIDNNNLVLCSACENPISGPVFSCDKCNYILHKTCAEMARHVKHPFHPQHPLVLLSTSPYEGRYICDSCRGLFRNFVYHCYICSYDLDVSCASQCNPDDGHKHEFMSVTNPQSFVCYACGLQGNEGLACLCTICQIWVHSSCAELPLAVRIKNHDHPLKLTYDLHHIYGFWGSITCGVCNGAMSAAFAGYFCSTCRFPVHLKCLQEDLRDEWEAVAEDEKSSTYYETEESLDIDFTYSFFGHEHLLKLKDEESDQRYSGKLCDGCNQPIMPPLFSCEEENCGFILHQSCVELPRTMLHPFHAHPLTLLPKAPNYDGIYRCDGCKRLSNGFVYRCDVCQFDLDVCCGSLQERIEHESHMHPLVLKKTTIARQCKGCHRWSKHVFVCEVCEDFAIDCGCATLPRGAWCMYDKHPLSLNYFAEEGLREYECGICNEKTGPKRWFYYCDDCDYGAHPYCVEGKSRLVKFGSSFQYDVHSHPLALVEETDQNSKCEACGESCNGWTLECGQCKIYFHREGQCFWKQFKKSAKYLELSGITRHRYAANVLASTPNI* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0033 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 87 IPR013083 -
Vra3g0033 565 SUPERFAMILY Cysteine-rich domain 488 528 IPR046349 -
Vra3g0033 565 ProSitePatterns Zinc finger PHD-type signature. 95 194 IPR019786 -
Vra3g0033 565 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 5 532 - -
Vra3g0033 565 Pfam C1 domain 425 471 IPR004146 -
Vra3g0033 565 Pfam C1 domain 60 107 IPR004146 -
Vra3g0033 565 Pfam C1 domain 256 305 IPR004146 -
Vra3g0033 565 Pfam C1 domain 314 360 IPR004146 -
Vra3g0033 565 Pfam C1 domain 4 51 IPR004146 -
Vra3g0033 565 Pfam C1 domain 168 218 IPR004146 -
Vra3g0033 565 SMART PHD_3 190 260 IPR001965 -
Vra3g0033 565 SMART PHD_3 24 85 IPR001965 -
Vra3g0033 565 SMART PHD_3 130 181 IPR001965 -
Vra3g0033 565 SMART PHD_3 442 509 IPR001965 -
Vra3g0033 565 SMART PHD_3 276 339 IPR001965 -
Vra3g0033 565 ProSitePatterns Zinc finger PHD-type signature. 25 98 IPR019786 -
Vra3g0033 565 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 5 532 - -
Vra3g0033 565 SUPERFAMILY Cysteine-rich domain 28 109 IPR046349 -
Vra3g0033 565 SUPERFAMILY Cysteine-rich domain 289 374 IPR046349 -
Vra3g0033 565 SUPERFAMILY Cysteine-rich domain 392 478 IPR046349 -
Vra3g0033 565 SUPERFAMILY Cysteine-rich domain 141 219 IPR046349 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0033 - - vun:114181199 1141.33