Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0005 ATGACGGAACCAACGGAGCCATGCACGTCTTCTTCGTTGGCGAGGGACTCTAGCACCGTGATTCACCCAAGGCGGGAGCCCTTTGAGCACGGCCTCTTGCCAATCCCACGCCTCATCTTCTCCGACCCCGCGCAAACCCTAATTCCGTTGAAGCGGAAGCTTCTAGAGTTATCCTCAAACCATCGAGTGGGCTCGGCGGCCATCTCAGAGGCATTGCAGATCTCCGTTGAGCACGCCAGACTCGTCCTCGATACGCTCGCCTCGATTCTGCCCTCCGACTCCGAACCTCTTGTCGCCGCAAAGCTCGGCGAAGCCGATTCCGTTGGCGTCGACGTGCATGATCTGGTACTGTTTCTCTACATTCAATCCTACAAGAGGCTCCTCCCGCGGACGCACAAGGACTCCGCTGCCGTCGCCGATGTCTGGCCTTCCACTTCCGCCTTCGATGGCTACTTGTCCGCCCTCTCGCCGCTTCAGCTTGTTCGCAGCAACAGTAGGCGGTTTTTGCCATCGCAGACTGATGAAGAGGCGCATCAATTGTCATATCTGCAAAAACACTTGGCTAACATTCTGTCTCTTCTAGCAGAGCCTGTGGATGGAGAAGGCGAAGAATCTCTGGTTTTAACCATGGATAGTTTTGAGCACCTTGGATTTCTAATTCAGTTTGGTGACAAGGGATCTGAAGGAAATTCTTTCAGTCAATTTTCTCCCTTTTTTGCAAATTCAGACCCTGACATGCCTGCTGTTCCTGTTCCTGCTGCTCAAGTTCATGATTGGCTTCAACAAAATATTGTTGCTGCTTTGGAATATATTTCTGAACGGACTTCTTCTAAGGAAAATGGGCCAGCTTCTCCTTCTGATCACGATGTTGCTATGACTGATGCATCCAGTGCCTCAGTTAATAAGGTCTCAACCAGTACCAGAGGTGCAAGTTTCATTGAAGGGATTTCCAAATCATCATATATGAAGCATGCACCTGACATTAAAGGTTCTAATGTTAAGGTTCTAAATTGCCACGAGTCTGCCATATACATCTTAGCACCTTTGAGATATGCTACTGTCTATGGGTGTTCAGATGCAACAATAGTTCTGGGAGCAGTAGGCAAGGCTGTCAGAGTAGAACATTGTGAAAGAGTTCATGTAATCGTAACAGCAAAACACATTTGTATTGCTAATTGTCGAGAATGTGTTTTCTTTTTGGGAGTGAACCAGCAACCTCTTATTGTTGGTGATAACCACAAACTGCAGGTGGCTCCCTATAATACTTTTTATTCCCAATTGGAGGAGCATATGGACGAAGTTGGAATTGTGCCCACAGTTAACCGATGGGATGAGCCTCTTGCATTGGGCATGGTTGATCCGCATGATTCATTGTCTCATCCAGCTGGTGTCTCTGATGTTCAAGCTGAGTCTGCTATGCGGGTGGACCCAGATCAGTTCACTTATTTTGTGATTCCCAACTGGTTTGGAGGAGAGTCCACTGGGGCTACAAAAGGCAACCCATTCACGTTACCGGATGCTTATAAGGCATCTCAGAATAAAAATCAAAAAAATTTAGAGGAGATAAGGCAGCTCTTACGAGAAGCACCTTTAGAAGAAAGTCGCAAACGAGAATTGTCATCTGCTCTCCATGTCTACTTCAGGGACTGGTTATATGCTTCCGGAAACATTCGTCAGCTTTATTTTCTACAAGGCGATTGA 1701 0.4738 MTEPTEPCTSSSLARDSSTVIHPRREPFEHGLLPIPRLIFSDPAQTLIPLKRKLLELSSNHRVGSAAISEALQISVEHARLVLDTLASILPSDSEPLVAAKLGEADSVGVDVHDLVLFLYIQSYKRLLPRTHKDSAAVADVWPSTSAFDGYLSALSPLQLVRSNSRRFLPSQTDEEAHQLSYLQKHLANILSLLAEPVDGEGEESLVLTMDSFEHLGFLIQFGDKGSEGNSFSQFSPFFANSDPDMPAVPVPAAQVHDWLQQNIVAALEYISERTSSKENGPASPSDHDVAMTDASSASVNKVSTSTRGASFIEGISKSSYMKHAPDIKGSNVKVLNCHESAIYILAPLRYATVYGCSDATIVLGAVGKAVRVEHCERVHVIVTAKHICIANCRECVFFLGVNQQPLIVGDNHKLQVAPYNTFYSQLEEHMDEVGIVPTVNRWDEPLALGMVDPHDSLSHPAGVSDVQAESAMRVDPDQFTYFVIPNWFGGESTGATKGNPFTLPDAYKASQNKNQKNLEEIRQLLREAPLEESRKRELSSALHVYFRDWLYASGNIRQLYFLQGD* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0005 566 MobiDBLite consensus disorder prediction 275 297 - -
Vra3g0005 566 ProSiteProfiles C-CAP/cofactor C-like domain profile. 285 436 IPR017901 -
Vra3g0005 566 Gene3D - 310 471 IPR016098 -
Vra3g0005 566 PANTHER UNCHARACTERIZED 14 566 IPR039589 -
Vra3g0005 566 PANTHER BNAC04G02540D PROTEIN 14 566 - -
Vra3g0005 566 Coils Coil 508 528 - -
Vra3g0005 566 Pfam Tubulin binding cofactor C 331 445 IPR012945 -
Vra3g0005 566 SMART carp 376 410 IPR006599 -
Vra3g0005 566 SMART carp 338 375 IPR006599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0005 Vra-Chr3 72092 85155 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0005 K16810 - gmx:100819271 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0005 3 72092 85155 Vra3g0005 3 72092 85155 ECH