Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1613 ATGAAGGTCCGGTCGGTGAAGTTAAGGGAGGCCCACGGTGCCATTGGCGGCCGCGCGTCTTTCTGCTCCATTCTGTGGGACCAGCAAGCCAATCATTTGGTTACCGCTTCCTCTTCCGACATTTCCATTTGTATCCACGACCCCCTTTCCCCCTCCATCTCCCCAAAAATTCTCCGCCACCACCGCGACGGCGTCACCGCCTTGGCTCTTAGCCCCAATTCCACTTGCCTCGCTTCCGGATCCATCGATCGCTCCGTCAAACTCTACAAGTTCCCCGGTGGAGAGTTTGAGAGAAACATTACAAGGTTTACACTCCCAATACGTTCCTTGGCATTTAACAAATCAGGGAGCATGGTTGCTGCTGCTGGTGATGACGAGGGTATCAAGCTTATTAATACATTTGATGGTACCATTACTAGGGTTCTTAAAGGACACAAAGGGTCTGTCACTGGCTTGGCTTTTGACCCTAATGGTGAATATTTAGCCTCTATGGATTCAATTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTCAAAGGCATAGCTCCTGACACTGGACTAGATGTTTCAGCTGTGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCTGGTTTGAAAAATGATGTTGTAATGTATGACAGGGACACTGCTGAGAAGTTGTTTTCTTTGAGAGGGGATCACATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGCAAGTACATTGCTACCTCTGGTTTAGACAGGCAGGTTCTGATCTGGGATGTTAATAGGAAGCAGGACATTGACAGACAGAGGTTTGATGAAAGAGTGTGTTGCATGGCGTGGAAGTCAATTGGGAATTCTTTGGCTGTTGTGGATGTTATGGGGAAGTATGGTATTTGGGAAAATGTTATTCCTTCGTCTATGAAGTCTCCAACTGAGGATATACCCGTGAAATACAAGAGCAATGGGGTTCTTTTGTTTGATGAGGAGGATCATGAAAATAGTACAAGTGGAAGCTTGAGTGATATTGGTGAAAATAGTAATGAGGAATCTGAGCCAACAAGCAGGAAAAGATTGCGTAAACACTCCTTGAGTGAGGAAAATTTAGGTGAGGATGGATATGAGGAAATTGCATTGTATCCGAAGGTCGATTCTCACAATAAACGAAATAGATCAAGCAAGGAAAAATTGGATAGTGGGAATATGGGATTGAGAGGCACCATGATAACATCTAAGGCAAAAAGGCAGGAGGCATTTCAGCCAGGATCTACACCTTTTCAGCCTGGGAAAAGGCGTTTCTTATGCTACAACATGCTTGGATGTATAACATCCATTGAACACGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCGACGAGTTCCTTCAATGACTGATCATTTTGGATTCACAATGGCAGCTTTGAGTGAGAGTGGGAGCGTCTTCGCAAATCCTTGTAAGGGGGAGAAGAACATGAGTACCCTCATGTATCGCCCATTTAGTAGCTGGGCTAACAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGTGCTGCTTGGATTGCTGCCGTAACTAGTTTGAACTATCTTCGCATCTTTTCTGAGAGTGGTTTGCAGAAACATGTATTTTCACTAGATGGGCCAGTGTTAACTGCATCCGGTTTCAAGGAGAAGCTTGCAGTTGTCACTCATGTCTTTGATTGCCTTTCCTCAAATGATCAGATGCTAGAGTTTATAGTATTTAATATTCCTCAAGGGACCCAACTCCTTCAAGGTCGCTTACCAATATCTCCTGGTTCATCTCTAAGTTGGTTTGGGTTTAGCGAGGAAGGCCAACTGTGTTCATACGATTCGAAGGGGGTGCTAAGATCGTATACAAGCCAATTTGGTGGCAGATGGGTCCCACTCTTCAGTGCTTTAAAAGAGAAGTCAAACGAAAACTACTGGGTGACGGGGTTGAATGCAAGCAAGTTATTTTGTGTGGTTTGCAAAAAGCCTGAAGAGTTCCCTCCGGTCATGCCTAAGCCAGTTCTCACTCCGTTAAGTCTTTCATTTCCTCTTGCTTCCTCTGACTTGGGATCTGAAGTACATGAAAACGAGTTTATGATGAACAACTTGCATCTCTTTTTGATTCAGAGAAGAATGGAAGAAATGGCATCTGTAGGTCTGGACACTACTTCACTTGATGACGATGCTTTCAATTTGGAAGCAGCGCAGGATAAATGTATACTGAGACTTATAGCATCATGCTGCAACAGCAATAAGCTTGTGCGAGCTACTGAACTTATGAAACTTTTGACTCTGGAAAAATCAATGAGAGGTGCAATAAAACTTGTTACTGCTCTGAAACTTCCAAACTTGGCCGAAAGGTTCAGCAGCATATTGGAGGAAAGGCTACTCGAGGAAGCAAAAAATGCTACGGAAACCAACATCAAAGAAAACTGTCCTGCACCCATTAAAGCTGATGCTCTTCATAACGCAAGCAAGGCCCCAACTCGAACTGAATCATTAAACGCAGTTACAATGTCATCACCAAAATTATCTTCTCCATCATTCATAAAGAAAGACAAAATTCAAGAGGGAGGTAAAGCTGGCATAATTAGAACTCCAATGGTAAATGAAACTATGAAGGGAAAGCAGACAGGTGAAGAAACAAGTGACAAGGTGGGAGACATGCGTCAGGTAGAACAAACTCATCCATCAAAGAAGAATGGACTTGACAAATTAGAGACTGGTTTGGGACAACCAAATCGTCCGTCCAATCCATTTTTGAAGTCTACTATCAAGTAG 2844 0.4367 MKVRSVKLREAHGAIGGRASFCSILWDQQANHLVTASSSDISICIHDPLSPSISPKILRHHRDGVTALALSPNSTCLASGSIDRSVKLYKFPGGEFERNITRFTLPIRSLAFNKSGSMVAAAGDDEGIKLINTFDGTITRVLKGHKGSVTGLAFDPNGEYLASMDSIGTVILWELQSGKIIHNLKGIAPDTGLDVSAVNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHIQPICFLCWSPNGKYIATSGLDRQVLIWDVNRKQDIDRQRFDERVCCMAWKSIGNSLAVVDVMGKYGIWENVIPSSMKSPTEDIPVKYKSNGVLLFDEEDHENSTSGSLSDIGENSNEESEPTSRKRLRKHSLSEENLGEDGYEEIALYPKVDSHNKRNRSSKEKLDSGNMGLRGTMITSKAKRQEAFQPGSTPFQPGKRRFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTRRVPSMTDHFGFTMAALSESGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGAAWIAAVTSLNYLRIFSESGLQKHVFSLDGPVLTASGFKEKLAVVTHVFDCLSSNDQMLEFIVFNIPQGTQLLQGRLPISPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSQFGGRWVPLFSALKEKSNENYWVTGLNASKLFCVVCKKPEEFPPVMPKPVLTPLSLSFPLASSDLGSEVHENEFMMNNLHLFLIQRRMEEMASVGLDTTSLDDDAFNLEAAQDKCILRLIASCCNSNKLVRATELMKLLTLEKSMRGAIKLVTALKLPNLAERFSSILEERLLEEAKNATETNIKENCPAPIKADALHNASKAPTRTESLNAVTMSSPKLSSPSFIKKDKIQEGGKAGIIRTPMVNETMKGKQTGEETSDKVGDMRQVEQTHPSKKNGLDKLETGLGQPNRPSNPFLKSTIK* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1613 947 CDD WD40 26 296 - -
Vra2g1613 947 Gene3D - 2 192 IPR015943 GO:0005515
Vra2g1613 947 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 923 - -
Vra2g1613 947 SUPERFAMILY WD40 repeat-like 19 307 IPR036322 GO:0005515
Vra2g1613 947 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Vra2g1613 947 Pfam WD domain, G-beta repeat 138 165 IPR001680 GO:0005515
Vra2g1613 947 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Vra2g1613 947 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Vra2g1613 947 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Vra2g1613 947 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Vra2g1613 947 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Vra2g1613 947 MobiDBLite consensus disorder prediction 355 370 - -
Vra2g1613 947 Pfam Minichromosome loss protein, Mcl1, middle region 424 705 IPR022100 -
Vra2g1613 947 MobiDBLite consensus disorder prediction 932 947 - -
Vra2g1613 947 MobiDBLite consensus disorder prediction 386 410 - -
Vra2g1613 947 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Vra2g1613 947 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Vra2g1613 947 MobiDBLite consensus disorder prediction 898 924 - -
Vra2g1613 947 MobiDBLite consensus disorder prediction 336 370 - -
Vra2g1613 947 MobiDBLite consensus disorder prediction 386 404 - -
Vra2g1613 947 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Vra2g1613 947 Gene3D - 193 308 IPR015943 GO:0005515
Vra2g1613 947 SMART WD40_4 226 266 IPR001680 GO:0005515
Vra2g1613 947 SMART WD40_4 93 132 IPR001680 GO:0005515
Vra2g1613 947 SMART WD40_4 135 174 IPR001680 GO:0005515
Vra2g1613 947 SMART WD40_4 51 90 IPR001680 GO:0005515
Vra2g1613 947 SMART WD40_4 2 47 IPR001680 GO:0005515
Vra2g1613 947 SMART WD40_4 177 223 IPR001680 GO:0005515
Vra2g1613 947 MobiDBLite consensus disorder prediction 892 947 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1613 58 272 Miscellaneous Gene Families AT5G08390 23.502 2.64e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1613 K11274 - gmx:100809300 1609.73