Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1606 ATGCGGCGACGGGCCGCCGATTTTCGGCGCCCGGCTCGGCGGCGGTTCGCTTATTGGATCTGGTTGCTTCTCGGCGCCTTCTCTCTTGCCGGTCTTGTTTTGTTCTTCCTGCAACATCATCACCGCGAGTATCGCTTACATAGCCCCTTTCTGGAGAGAAACGCTAAAGTAGAAAATTCTGCTAAGAGATTGAATTTTACTGAAGAAATTTTAAGTGCAACATCCTTCTCACGGCAACTATCAGAGCAAATGGTTCTGGCCAAGGCTTATGTGATTATTGCCAAAGAGCACAATAATCTTCACCTTGCCTGGGAGCTTAGCTCAAAAATTAGAAGTTGCCAGCTTTTGCTTTCAAAAGCTGCCATGACTGGGGAGCCTGTGACCATGGAGGAAGCTGGGCCAGTTATTAAAAGCCTGTCTTCTCTAATTTTCAAGGCACAGGATGTCCATTACGACATTGCAACCACTATAGTAACGATGAAATCATATATTCAAGCACTTGAAGAACGTGCAAATAAAGCAACAATTCAAAGCACTGTGTTTGCTCAAGTATCAGCTGAAGCACTACCCAAGAGTCTTCATTGCTTAAATGTGAAACTTATGGCTGATTGGCTAAAGATGACATCCCGGCAAAAATTTTCACATGAGAGTAGAATCTCTCCCCAGCTCACAGATAATAATTTATATCACTTCTGCATTTTTTCAGATAATGTACTGGCAACATCTGTAGTTGTTAACTCTACAGTCATCAATGCAAGCCATCCAAAACGCTTCGTCTTTCACATTGTTACTGATGGTATTATTTATGGAGCAATGAAAGCATGGTTCCTCAGTAATGACTTAAAAGGGGCTACCATAGAGGTGCAGAATATTGAGGAATTTGATTGGTTGAATGAATCTTATGCTCCAATTGTCAGACAGCTACACAGTCCAGAATCACGAGCCTTTTATTTTGGGCCTTTTCAAGGTGTAAATGTTGAGCCAAAATTGCAGAATCCCAAGTTTGTGTCTTTGCTAAATCATCTTCGGTTTTACATCCCTGAGATTTATCCATTACTTGAGAAGATTGTTTTCCTTGATGATGATGTTGTTGTTCAGAAGGACCTAAGCCCACTTTTCTCATTGGATTTGCATGGAAATGTGAATGGTGCCGTTGAAACTTGTCTAGAAGCATTTCACAGGTACTACAAGTATCTCAACTTTTCAAATTCGATTATAAGCTCAAAGTTTGATCCACAGGCATGTGGATGGGCCTTTGGTCTGAATATTTTTGACCTGGGTGCATGGAGGAAGGCAAATGTCACCGCAAAGTATCATTATTGGCAAGAGCAGAATGCTGATGGGACACTCTGGAAGCTTGGTACACTTCCCCCTGCTCTTCTAAGCTTTTATGGCTTGACAGAACCACTTGACAGAAGATGGCATGTATTAGGATTGGGTTATGACCTAAATATTGACAGCCGCCTGATTGAAAGTGCAGCAGTTATTCACTTCAATGGGAACATGAAACCATGGCTAAAGTTAGCTATAGGCAGGTATAAGCCATTATGGCAGAGGTACATAAATCAAAGTCACCCTCATCTACAAGATTGTGCCACCGGTTAA 1605 0.4206 MRRRAADFRRPARRRFAYWIWLLLGAFSLAGLVLFFLQHHHREYRLHSPFLERNAKVENSAKRLNFTEEILSATSFSRQLSEQMVLAKAYVIIAKEHNNLHLAWELSSKIRSCQLLLSKAAMTGEPVTMEEAGPVIKSLSSLIFKAQDVHYDIATTIVTMKSYIQALEERANKATIQSTVFAQVSAEALPKSLHCLNVKLMADWLKMTSRQKFSHESRISPQLTDNNLYHFCIFSDNVLATSVVVNSTVINASHPKRFVFHIVTDGIIYGAMKAWFLSNDLKGATIEVQNIEEFDWLNESYAPIVRQLHSPESRAFYFGPFQGVNVEPKLQNPKFVSLLNHLRFYIPEIYPLLEKIVFLDDDVVVQKDLSPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSKFDPQACGWAFGLNIFDLGAWRKANVTAKYHYWQEQNADGTLWKLGTLPPALLSFYGLTEPLDRRWHVLGLGYDLNIDSRLIESAAVIHFNGNMKPWLKLAIGRYKPLWQRYINQSHPHLQDCATG* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1606 534 SUPERFAMILY Nucleotide-diphospho-sugar transferases 229 531 IPR029044 -
Vra2g1606 534 CDD GT8_like_1 229 522 - -
Vra2g1606 534 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 231 531 IPR029044 -
Vra2g1606 534 PANTHER HEXOSYLTRANSFERASE 3 533 - -
Vra2g1606 534 Pfam Glycosyl transferase family 8 233 508 IPR002495 GO:0016757
Vra2g1606 534 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 533 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1606 Vra-Chr2 24060338 24064302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1606 1 531 Glycosyltransferase AT2G20810 53.545 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1606 K13648 - gmx:100817381 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1964 7 39115521 39119445 Vra2g1606 2 24060338 24064302 PCT