Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1601 ATGGATAGCAGTAACTCGGAACAGGCCGTGCTTGATGGAAAACTCTACAGACACCTCAATTCTCTCATCGTCGCACATCTTCGGGACAACAATCTCACCCAGGCTGCAAGTGTTGTTGCTTCAGCAACCATGACTCCACTGAATGTGGAAGCCCCACCTAACAGGCTTCTCGACCTGGTTTCTAAGGGTCTTGCAGCGGAAAAGGGCGACGTCACGAGAGGCACTGATTTCTCTGCCTCACTGCCCCTACCTCACACAGCAGCTATTGATTTCAGCACTGCGCCTGATATGAAAGGTTCCTCAAAGAGCTTCCCGAAGCATGAAACGCGGCACCTTTCGGAACACAAGAATATTGCCAGATGTGCTAGGTTTAGTGCTGATGGAAGGTTTGTTGCCACTGGAAGTGCCGATACTTCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAGATGTTGCTGCCAGAGGCAAAGGATGGTCCTGTGCGGCCTGTCATTCGAACATATTATGATCATATACAACCAATAAATGATCTGGATTTTCATCCACAAGGTACTATCCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAACGAATGCAAAGAGAGCATACAGGGTTATCCAGGACACACACAATGTTCGATCTGTATCTTTCCATCCATCTGGGGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTGTCATCAAATATCCCAGAGACCAGCCCTAGTGGAGCCATAAACCAGGTCAGATATTCTTGTACAGGTGCCATGTATGTTACAGCATCTAAAGATGGTGCTATTAGGTTATGGGATGGCATCACAGCCAATTGTGTGCGGTCAATAACTGCAGCACACGGAACAGCTGAGGCTACCAGTGCAATTTTTACCAAAGATCAAAGGTTTGTTCTCTCCTCCGGGAAGGATTCTACCGTAAAGCTTTGGGAAGTCGGCTCTGGAAGATTAGTCAGACAATATCTTGGAGCTATACATACCCAGCTAAGGTGTCAGGCTATTTTTAATCAGACAGAAGAATTTATTATATTCATAGATGAACTGAGCAATGAGATCGTTATCTGGGATGCAATGACGACAGAAAAAGTTGCAAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCACCAGTCGAGTCAGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGGAGACTGTATAA 1278 0.4468 MDSSNSEQAVLDGKLYRHLNSLIVAHLRDNNLTQAASVVASATMTPLNVEAPPNRLLDLVSKGLAAEKGDVTRGTDFSASLPLPHTAAIDFSTAPDMKGSSKSFPKHETRHLSEHKNIARCARFSADGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRPVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSSNIPETSPSGAINQVRYSCTGAMYVTASKDGAIRLWDGITANCVRSITAAHGTAEATSAIFTKDQRFVLSSGKDSTVKLWEVGSGRLVRQYLGAIHTQLRCQAIFNQTEEFIIFIDELSNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPVESAFISCGTDRSVRFWKETV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1601 425 ProSitePatterns Trp-Asp (WD) repeats signature. 321 335 IPR019775 -
Vra2g1601 425 SMART WD40_4 382 422 IPR001680 GO:0005515
Vra2g1601 425 SMART WD40_4 247 290 IPR001680 GO:0005515
Vra2g1601 425 SMART WD40_4 206 244 IPR001680 GO:0005515
Vra2g1601 425 SMART WD40_4 293 334 IPR001680 GO:0005515
Vra2g1601 425 SMART WD40_4 105 144 IPR001680 GO:0005515
Vra2g1601 425 SMART WD40_4 161 200 IPR001680 GO:0005515
Vra2g1601 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 290 - -
Vra2g1601 425 MobiDBLite consensus disorder prediction 92 111 - -
Vra2g1601 425 PRINTS G protein beta WD-40 repeat signature 187 201 IPR020472 -
Vra2g1601 425 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Vra2g1601 425 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Vra2g1601 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 112 153 IPR001680 GO:0005515
Vra2g1601 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 209 IPR001680 GO:0005515
Vra2g1601 425 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 6 424 IPR044633 GO:0005848|GO:0031124
Vra2g1601 425 CDD WD40 108 422 - -
Vra2g1601 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 202 - -
Vra2g1601 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 343 IPR001680 GO:0005515
Vra2g1601 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 299 IPR001680 GO:0005515
Vra2g1601 425 SUPERFAMILY WD40 repeat-like 104 422 IPR036322 GO:0005515
Vra2g1601 425 Gene3D - 96 424 IPR015943 GO:0005515
Vra2g1601 425 Pfam WD domain, G-beta repeat 165 200 IPR001680 GO:0005515
Vra2g1601 425 Pfam WD domain, G-beta repeat 263 290 IPR001680 GO:0005515
Vra2g1601 425 Pfam WD domain, G-beta repeat 295 333 IPR001680 GO:0005515
Vra2g1601 425 Pfam WD domain, G-beta repeat 216 239 IPR001680 GO:0005515
Vra2g1601 425 Pfam WD domain, G-beta repeat 109 143 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1601 165 421 Miscellaneous Gene Families AT5G08390 20.463 7.83e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1601 K14406 - gmx:100809908 815.068