LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g1597	ATGGATGTAGTAAATGATTTTCATATGGGAGGATCAACCAGTACAGAGGATGTAAATTTGTCACAGAAGCGGAGGACGCCGAAAAGGAAGAAACAAGAATTTAATTCGACAAAGCAGAATGACAAGAGCAAACGGAAGAAGACAACACATAATCCTATTGAAGGCAATAATAGCGGTTGTGGCACCTCAGAGAATTCTTTTTCACCAAAAGCTTCTGTTCCTGCATTGGATATGCAGTCAGGACATCCAATTCAATGTTTTTCCACTGATCCAATAACAAGTCAATCTTGTGAGGAAGTGGGTTTTTGTCAAGGAGGCCATGAAGAAAAGGAGCAAAAGATGATAAATGCAACTGCAGAAAAAGCTTCCTCACCTGCATTGGATATGCTGTCAGGACATCCAATTCAATGTTTTTCCACTGATCCAATAACAGGTCAATCTTGTGAGGAAATGGATTTTTATCAGGGAGATCAAGAAGAAAAGGAACAGAAGATTATCAGTACAACTGCAGCAAAAGCTTCCTCCCCTGCATTGGATTTGCTCTCAGGACGTCCAATTCAATGCTTTTCCACTGATCCAATAACATGTGAATCTTGTGAGGAAGTGGGTTTTTGTCAGGGAGATCATGAAGAAAAGGAACAGAAGACAATGGATACAACTACAGAAAAGCAGCATAACGTTCCAGAAGTAAGCTGCAACCACACTTCTGTTGCAGCAAGTCCGGAGCCTTTTTCGAAAGAGTGTGTGCCAGAAGTTGTAAAATTGAGTACTGAGCATAGCATAAATGATAACATTTCCAACCCGGAGGACAAGAATAGTTTTGTAAATGATACAAGTATGATGAAGGAAGATGTTGATGACCCAGCAGATTATGAATTGTCCGATAAAAACATGTGTTACAAAGCCTGTACAAGGAGACAAATGGTTGATGCTGATTGTAGGAGAAGCAGTGGTGACCATGCTCCTGAAAGTGCTAACAAGGAACCAACTTTTCAGGATCGTGACAAGGATCATTCACACCAATTTTCTGATGGATCATTGAGAGTTGGCTTGATGGGTGGAGAAACAAAACTTTCATTTGATCAAGTTACCTCACATAGTGGAGCTGCAGCTGAGGAAATAAAATTGAGCACTGGCATCATTGATGAGAAAAGATTTATTACTACTTCTGTTGTAGACATTCCTGTGGAGCATCTCGAAGCAGATGGTAGACAACAGGATGATACAGAGATTACAAGAAGCAATCTGTGTTCTGCAGGTGAGCAAATAGAGTTGAACACTGACAAAATTGATGAGCAAAGGTCTATGACTGCCACATCTGCTGTTGGCATTCATGTGGAACAAGTTGAAACTAATGGTAGACAGCTAGATCATGCGGAGATTACAAGAAATGATCTGTGTTGTGCAGGTGATGTTTCTGATTTAAGCTTAGACACAGTAAGAGATGGTCATTTAAAGATTTCACAATTCTCACTAGACAGAAGTGATTTGGGGAACCCAAAGAAGAAGCTTCTCATCCTTGATGTGAATGGACTGCTTGCTGATTTTGTCAGTATCCATGACACTAGAACAAGATATAGACGAGAACGAGAGCCAGATTTTATACTGAAAGGGAGAAAAGTCTACAAGAGGCCCTTTTGCGAGGATTTTCTACAGTTTTGCTTTGACAGATTTCATGTAGGAGTATGGTCTTCTAGAGCCAAGTGCAATGTTGATGAAGCAATCAAATTTCTTATGGGGAAATCTGCATCCAAACTTCTCTTTTGTTGGAATCAGTCCCACTGTACTACAACTGAATTCACTACTGTTGAGGATATACACAAGCCCCTTGTGTTGAAGGAACTTAGAAAATTGTGGGAAAAGGAAGAACCCGATCTACCATGGGAGAAGGGAGAGTTTAACGAGTCCAACACATTATTATTGGATGACTCCCCTTACAAGGCACTAATGAATCCTATGCATTCAGCTATATTTCCTTATTCTTACCGATACTTCTACACCAGAGACTCAGAATTAGGACCAGAAGGTGATCTTCGGATTTATCTACAAGGGTTGGCTTTAGCTGAGAATGTTAGAAAGTACGTGTCAGAAAATCCTTTTGGGCAACGGCCAATAAGAGAAGCAAATCCATCATGGGTTTACTACCGTAGAGTTATAGAATCAGTTCAAAAGAAGCGATCAGGCACTACATTTGTTTAA	2199	0.4025	MDVVNDFHMGGSTSTEDVNLSQKRRTPKRKKQEFNSTKQNDKSKRKKTTHNPIEGNNSGCGTSENSFSPKASVPALDMQSGHPIQCFSTDPITSQSCEEVGFCQGGHEEKEQKMINATAEKASSPALDMLSGHPIQCFSTDPITGQSCEEMDFYQGDQEEKEQKIISTTAAKASSPALDLLSGRPIQCFSTDPITCESCEEVGFCQGDHEEKEQKTMDTTTEKQHNVPEVSCNHTSVAASPEPFSKECVPEVVKLSTEHSINDNISNPEDKNSFVNDTSMMKEDVDDPADYELSDKNMCYKACTRRQMVDADCRRSSGDHAPESANKEPTFQDRDKDHSHQFSDGSLRVGLMGGETKLSFDQVTSHSGAAAEEIKLSTGIIDEKRFITTSVVDIPVEHLEADGRQQDDTEITRSNLCSAGEQIELNTDKIDEQRSMTATSAVGIHVEQVETNGRQLDHAEITRNDLCCAGDVSDLSLDTVRDGHLKISQFSLDRSDLGNPKKKLLILDVNGLLADFVSIHDTRTRYRREREPDFILKGRKVYKRPFCEDFLQFCFDRFHVGVWSSRAKCNVDEAIKFLMGKSASKLLFCWNQSHCTTTEFTTVEDIHKPLVLKELRKLWEKEEPDLPWEKGEFNESNTLLLDDSPYKALMNPMHSAIFPYSYRYFYTRDSELGPEGDLRIYLQGLALAENVRKYVSENPFGQRPIREANPSWVYYRRVIESVQKKRSGTTFV*	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g1597	732	MobiDBLite	consensus disorder prediction	52	73	-	-
	Vra2g1597	732	Gene3D	-	478	700	IPR023214	-
	Vra2g1597	732	ProSiteProfiles	FCP1 homology domain profile.	498	685	IPR004274	-
	Vra2g1597	732	SUPERFAMILY	HAD-like	496	692	IPR036412	-
	Vra2g1597	732	Pfam	NLI interacting factor-like phosphatase	503	692	IPR004274	-
	Vra2g1597	732	MobiDBLite	consensus disorder prediction	314	343	-	-
	Vra2g1597	732	PANTHER	NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED	6	727	-	-
	Vra2g1597	732	SMART	forpap2	501	669	IPR004274	-
	Vra2g1597	732	MobiDBLite	consensus disorder prediction	1	76	-	-
	Vra2g1597	732	MobiDBLite	consensus disorder prediction	32	51	-	-
	Vra2g1597	732	PANTHER	HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN	6	727	-	-
	Vra2g1597	732	MobiDBLite	consensus disorder prediction	314	346	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g1597	Vra-Chr2	23964673	23969737	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g1597	-		-	var:108332009	1246.11