Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1589 ATGTCAAAACTTAAGGTTAATCAACTTCGCCAATTAAGAGACATTTTTGAAAAATTTGACAGAGATTCTGATGGTAGCCTAACCAATTTGGAACTAGTTGCGCTCCTTCGATCATTAGGGCTAAAGCCTTCAAGTGACCAAATCCATGTGTTATTAATGAACTTGGATTCAAACGGAAATGGATTCGTGGAGTTCGATGAGTTGGTGGATGCAATATTACGTAACATAAGCGCAAAGATATTATTGAACCAAGAAATGTTGCTTGGGGTATTTAAATATTTTGATCGTGACGGAAATGGTTTTATAACAGCCGCAGAACTAGCAGGGGCAATGGCCAAAATGGGTCAACCCCTTACATATAGAGAGCTTAGAGAGATGATCACAGAAGCAGACACAGATGGGGATGGTGTCATTAGCTTCAATGAGTTTGTCACTGTGATGGGTAGATCAGCCTCTGACTTCTTAGACTTTGCACTGTTGTAA 483 0.3975 MSKLKVNQLRQLRDIFEKFDRDSDGSLTNLELVALLRSLGLKPSSDQIHVLLMNLDSNGNGFVEFDELVDAILRNISAKILLNQEMLLGVFKYFDRDGNGFITAAELAGAMAKMGQPLTYRELREMITEADTDGDGVISFNEFVTVMGRSASDFLDFALL* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1589 160 PANTHER CALCIUM BINDING PROTEIN 3 158 - -
Vra2g1589 160 CDD EFh 86 147 IPR002048 GO:0005509
Vra2g1589 160 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Vra2g1589 160 Pfam EF-hand domain pair 87 147 IPR002048 GO:0005509
Vra2g1589 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Vra2g1589 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Vra2g1589 160 SMART efh_1 47 75 IPR002048 GO:0005509
Vra2g1589 160 SMART efh_1 122 150 IPR002048 GO:0005509
Vra2g1589 160 SMART efh_1 11 39 IPR002048 GO:0005509
Vra2g1589 160 SMART efh_1 86 114 IPR002048 GO:0005509
Vra2g1589 160 Gene3D - 1 81 - -
Vra2g1589 160 SUPERFAMILY EF-hand 3 147 IPR011992 -
Vra2g1589 160 Gene3D - 82 159 - -
Vra2g1589 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Vra2g1589 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Vra2g1589 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Vra2g1589 160 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 158 - -
Vra2g1589 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Vra2g1589 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Vra2g1589 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1589 Vra-Chr2 23841237 23841719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1589 7 155 EF-hand Containing Proteins AT1G18530 71.812 7.72e-77 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1589 K13448 - gmx:100813924 263.077