Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1578 ATGGTCGATCACTACAACAAGTTGGTTAAACTAGCTGCGAGGGCTTTTTATGATGATCTAACGAGTAAAGGAGAGAATCAACCTAAATCGGGAAGGAGTGATAACAGAGGAATCGCTGTAGTGATTCTCGATGCCCTCACAAGGCGACAATGGGTCAGAGAAGAAGATTTGGCAAAAGATCTCAAATTACACACAAAACAACTTCGCCGAACTCTGCGGTTTTTTGAAGAGGAGAAGATCATTACTAGAGAATATAGAAGAGAGACAGCAAAAGGAGCCAAATTGTATAGTGCTGCTACAGCTGCTACAGTTGATGCTCAACTGACTGGAAAAGAGGGAGAAGAGAAGGTCAAGTTACACACACACTCTTACTGTTGTCTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATCCATCGCATGAAGAAGCTGTTGAAAGATGAATTGGACAACAAGAACACAATTGAAGAATATATCTGTACAAAGTGTGGAAAAAGATACAATGCTCTGGATGCATTGCGGTTAGTATCTTTTGAAGATGACGACTTCCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAGTGACAAGTTTGTTGTTCAAGAAGGGGCTGATGGAGATGATAATGCAAGAAGACGACGACATGAAAAGTTAAAAGACATGCTTCAAAAGATGGAGATACAGCTCAAGCCTTTAATGGACCAACTCAGCAGGGTGAAAGATTTGCCAGTTCCAGAATTTGGTAGTCTCCTAGCATGGGAAGCTCGAGCTAGTGCTATGGGGCGTGCAGCCAACGGAGATATGGCTGGTGATTCTAAAATTTCTCAGCTTGGATATAATGGAGCACCAATGCCTTATAGTGGGGATACTAAGGTTGTGGTGGACTTCAATGGGACTGAAGGCAATAGACATGATGTTAAGTCTGAAACTGAAAGTTCATCTCTAAAGGTTTTGCCACCATGGATGATAAAATCAGGGATGGTTCTTACAAAAGAACAACGAGGAGAGGTGAAAGAGGAAATAAAAATGGATGGGACTTCAACTTCCACATCAGCACAGTACTCGGATGACAAGAAATCAACGGTTGATCATGATGATAAAAAAAATATACAGGATGAGTATATCAAGGCTTATTATGCTGCCCTGCTTAAACAACAACATGAAATGGAAGCTTCTAGAAAACAAGACTTGTCAGATACATTTACTGAAAATGATCCTTCTAGCCATGCTTCTATTCGTCAAGTTGGCATCAAATCAAAACGTGAGGAAGATGATGATGATGATGGTACAGACTGGGAGCAAGCTCCAGTTGCAGCTGGAAATGAAAATTACAAGGTCAATGATTTGAATGTTCAAGCTGATGTTGCTCCAGCAGATGTCGATGAAGACGAAGATGTGGACTGGGAGGAAGGTTGA 1425 0.4091 MVDHYNKLVKLAARAFYDDLTSKGENQPKSGRSDNRGIAVVILDALTRRQWVREEDLAKDLKLHTKQLRRTLRFFEEEKIITREYRRETAKGAKLYSAATAATVDAQLTGKEGEEKVKLHTHSYCCLDYAQIYDVVRYRIHRMKKLLKDELDNKNTIEEYICTKCGKRYNALDALRLVSFEDDDFHCESCNGKLEVESDKFVVQEGADGDDNARRRRHEKLKDMLQKMEIQLKPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDMAGDSKISQLGYNGAPMPYSGDTKVVVDFNGTEGNRHDVKSETESSSLKVLPPWMIKSGMVLTKEQRGEVKEEIKMDGTSTSTSAQYSDDKKSTVDHDDKKNIQDEYIKAYYAALLKQQHEMEASRKQDLSDTFTENDPSSHASIRQVGIKSKREEDDDDDGTDWEQAPVAAGNENYKVNDLNVQADVAPADVDEDEDVDWEEG* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1578 474 MobiDBLite consensus disorder prediction 335 368 - -
Vra2g1578 474 Coils Coil 218 238 - -
Vra2g1578 474 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT 8 452 IPR039997 -
Vra2g1578 474 Coils Coil 58 78 - -
Vra2g1578 474 Pfam TFIIE alpha subunit 39 94 IPR024550 -
Vra2g1578 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 206 IPR013083 -
Vra2g1578 474 MobiDBLite consensus disorder prediction 460 474 - -
Vra2g1578 474 ProSiteProfiles TFE/IIEalpha-type HTH domain profile. 5 137 IPR017919 -
Vra2g1578 474 SMART tfiie3 37 208 IPR002853 GO:0006367
Vra2g1578 474 SUPERFAMILY Zinc beta-ribbon 150 197 - -
Vra2g1578 474 MobiDBLite consensus disorder prediction 393 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1578 Vra-Chr2 23695300 23710903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1578 K03136 - gmx:100779773 814.683