Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1575 ATGGTTGGAAATTGTGGTGATCTTGTTGCATTTTGTCTTGTCTTCTTGACCGTGGTTTCAGGTGGGTCTGCATGGGTTGGCGTGAACTGGGGAACCATGGCAACGCACCAAATTCGCCCCGAGAAGGTGGTGAAGATGCTAAAGGAAAATGGGTTCACCAAATTGAAGCTCTTTGATGCGGATGAACTCATTATGGCAGCTCTTATGGGGACCGATATCCAAGTCATGCTCGCAATACCCAACAACATGCTGGAAAAGATAAGTAACACTCCTAAAGCTGCAGATTCTTGGGTCTATGAAAATGTCACCTCTTACTTCTTCAATGGTGGCGTCAAAATCAAGTATGTTGCTGTGGGTAATGAGCCTTTCCTTAAAGCATATAATGGTACCTTTGCGAAGAAAACGCTGCCAGCCCTGAAGAATATACAGACATCACTTAATAAAGCCGGGTTGAGTTCAAAGGTGAAAATCACTGTTCCATTCAATGCTGATATTTACTATTCACCTGATTCAAATCCAGTTCCATCAGCTGGTGACTTCAGGCCTGAAATGAGAGACCTCACCATTGAGATAATACAATTCTTCAAGCCTCTCAGGGACGGTAAGGCACTTTACACCAATGTGTTTGATGCAAATCTTGACACTCTTCTGTGGGCTTTAGACAAGGCAGGGTATCCTGACATGGAGGTTTTGATTGGGGAAATTGGGTGGCCAACAGATGGTGATAAGAATGCTAATGCCAAGAGTGCAAGGAGGTTCAACTTTGGTTTGCTTAAACATGCTCTGAGTGGGAAGGGTACCCCTAAAAGGAAAGGCACAATTGACTTGTACCTGTTCAGCCTCATTGATGAGAACATTAAAAGTGTTGCTCCTGGGAACTTTGAGAGGCATTGGGGGGTTTTTGAGTTTGATGGGAAGCCAAAGTATGAATTAGACTTAACAGGTCAGCACAAGGAAAAAGGTCTTATCCCTGTGGAAGGTATAAAGTACCTGCAAAAGAGGTGGTGTATTTTAAATCCAGATGTTACTGACTTTGATGGTTTGGCTGGTAGCATTGACTATGCTTGTACCTTTTCTGATTGTACTTCCCTTGGCTATGGCTCTTCTTGTAATTATCTTAGTCTCCAAGGGAATGCATCTTATGCTTTCAATATGTATTATCAAGTAAATAACCAACAGGGTTGGAGCTGTGATTTCTCTAGTTTGGCTACCATAACACAGAAGGATCCATCACAGAGTGGCTGCCAATTTCCCGTGATGATAGCTAGCAGTTCATCTTTGCTGCTGCTGCATGAAGAAGGACTTTTATGTATCCTAAAGATAGCATTGGAGGTTTATATTTTCGTTCTGATTTTGTTATAG 1362 0.4251 MVGNCGDLVAFCLVFLTVVSGGSAWVGVNWGTMATHQIRPEKVVKMLKENGFTKLKLFDADELIMAALMGTDIQVMLAIPNNMLEKISNTPKAADSWVYENVTSYFFNGGVKIKYVAVGNEPFLKAYNGTFAKKTLPALKNIQTSLNKAGLSSKVKITVPFNADIYYSPDSNPVPSAGDFRPEMRDLTIEIIQFFKPLRDGKALYTNVFDANLDTLLWALDKAGYPDMEVLIGEIGWPTDGDKNANAKSARRFNFGLLKHALSGKGTPKRKGTIDLYLFSLIDENIKSVAPGNFERHWGVFEFDGKPKYELDLTGQHKEKGLIPVEGIKYLQKRWCILNPDVTDFDGLAGSIDYACTFSDCTSLGYGSSCNYLSLQGNASYAFNMYYQVNNQQGWSCDFSSLATITQKDPSQSGCQFPVMIASSSSLLLLHEEGLLCILKIALEVYIFVLILL* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1575 453 PANTHER O-GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 7 195 - -
Vra2g1575 453 PANTHER O-GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 196 430 - -
Vra2g1575 453 ProSitePatterns Glycosyl hydrolases family 17 signature. 228 241 IPR000490 GO:0004553|GO:0005975
Vra2g1575 453 SMART X8_cls 334 417 IPR012946 -
Vra2g1575 453 Pfam X8 domain 335 404 IPR012946 -
Vra2g1575 453 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 196 430 IPR044965 GO:0004553|GO:0005975
Vra2g1575 453 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 7 195 IPR044965 GO:0004553|GO:0005975
Vra2g1575 453 Pfam Glycosyl hydrolases family 17 26 195 IPR000490 GO:0004553|GO:0005975
Vra2g1575 453 Pfam Glycosyl hydrolases family 17 200 312 IPR000490 GO:0004553|GO:0005975
Vra2g1575 453 SUPERFAMILY (Trans)glycosidases 26 312 IPR017853 -
Vra2g1575 453 Gene3D - 330 426 - -
Vra2g1575 453 Gene3D Glycosidases 196 321 - -
Vra2g1575 453 Gene3D Glycosidases 25 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1575 Vra-Chr2 23650361 23652683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1575 8 421 Miscellaneous Gene Families AT2G19440 52.573 1.42e-165 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1575 - - gmx:100781894 761.14