Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1569 ATGATTGAATTATCCGTTCAGAGCCATCCACCGCCGTTCAAATTCTCAATTCACGACGTCACTCTTCCTTCCTCTGCAAATTCCGACCACCGTGACCTCCATGCATGCATGGCTTCTCTCTTTCCTTCAGTCCCCAACCCTCCCCTCCACCTTCCCCATTCCAAACCCCAAAACCTTGCAAACCTCACGCCGAAACAATTCTCTCACAACCACTTCTCTTTGCTCTGCAAAGATGGCCGAATTCGCGAAGCCGTAGATTCCCTCTCCGAAATGCAATGGCGGAACCTCCAGGCTGGCCCCGACCTTTATGGAACCCTCCTTCAGGGCTGTGTCTACGAGAGAGCCCTACCCCTCGGCATCCAAATCCACGCCCATCTCATCAAAAAAGGTCCTTCCTTCTACCAAAACGAGTTCGTCGAATCCAAGCTAATCATTCTCTACGCAAAATGTGGCGCCTCTGACGTAGCAACGCGCCTCTTCCGCGATGCGCTAAGCCAGAACGTCTTCTCCTGGGCGGCCATTATCGGGTTGCACACGCGAACGGGCCGTTGCGAAGAAGCGCTTTTGGGTTACATCGAAATGCAAAACCACGGGTTCTTACCTGACAACTTCGTTGTGCCCAATGTTTTGAAGGCTTGCGGGTTTCTTCGGTGGGTCGGATTTGGTAAAGGGGTTCATGCGTTCGTCGTGAAGACAACGGGGTTAAGTGAATGTGTTTATGTTGCAACTAGTCTTGTCGACATGTATGGGAAGTGTGGGGCTTTGGAGGATGCGGAGAGGGTGTTTGATGGAATGGCTGAGAGAAACAACGTCGCTTGGAACTCCATGATTGTGACCTACGCGCACAACGGAATGAACGAGGAGGCGATAGGGATGTTTCGGGAGATGAGGTTGCAGGGAGTGGAAGTAACTCCCGTTGCTTTGTCGGGATTTTTTACGGCATGTGCGAATTTGGAAGCCATTGGAGAAGGACGACAAGGGCAAGGCCTTGCTGTTGTGGGAGGGTTGGAGTTGGATGACGTTTTGGGGAGTTCAATTATGAACTTCTATTTCAAGGTTGGTATGGTTGAGGAAGCTGAGGTGGTTTTTGGAGAAATGGTGATGAGAGATGTGGTGGCGTGGAATTTGGTTGTCTCGGGTTATGTGCAGTATGGGATGGTTGGGAAGGCGCTTGAGATGTGTCTTGTGATGAGGGAACATAATTTAAGGTTTGACTGTGTGACATTGTCTTCTTTGTTGGCTGTTGCTGCTGATACAAGAGATGTAGGATTGGGTATGAAGGCGCACGGATATTGTGTTAAGAATGATTTTCAGTATGATGTGGTTGTCTCGAGTGGAATCATTGATATGTACGCGAAGTGTGGGAGGATGGATTGTGCAAGAAGAGTGTTCAGCTCTACCAGAAAGAAGGACATTGTGTTGTGGAATACGATGTTGGCTGCTTGTGCTGAGCAGGGTCTGAGTGGGGAGGCCTTGAAGTTGTTCTTTCAAATGCAGCTAGAAAGTGTGCCTCCAAATGTGGTTTCTTGGAATTCTGTGATTTTTGGTTTCTTTAAGAATGGTCAGGTTGCTGAGGCTAGAAATATGTTTGCGGAAATGTGCTCCTCTGGTGTTACGCCTAATTTGATCACTTGGACGACGGTGATGTCTGGTTTGGCCCAGAATGGTCTTGGTTGTGATGCCATGATGGTTTTCAGGGAGATGCAGGATGTGGGAATCAGACCTAATAACATGAGCATAACTTCTGCGCTCTCAGCCTGCACCAGTATGGCATTGTTGAAATATGGAAGGGCAATCCATGGGTACATAATGAGGCATTATATGTTTCAATATCTTGATATCGCAACCACTACAATAGATATGTATGCTAAATGTGGAGCATTGAATGATGCCAAATATGTGTTCAGTATGTGCTCGACAAAGGAGTTGTCTGTGTACAATGCAATGATATCTGCATATGCATCTCATGGTCAAGCTAGAGAAGCTCTTGCGCTTTTTAAACAGTTAGGAAGAAAAAGAATCGTGCCAGATCACATAACCCTTACTAGTGTGTTGTCAGCATGCAGCCACGGGGGGTTGGTGAAGGAGGGCATCGAGATTTTCAACTATATGGTCTCTGATCTCAAGATGTCACCGAATCAGGAACATTATGGTTGTTTGATCAAACTTTTGGCCAACGATGGTCAGTTAGATGAAGCTCTTAAGACTATTTTGACAATGCCATGCCATCCTGATGCACATATATTAGGATCTCTTCTTGCGGCGTGTGGTCAAAATCATGATATTGAACTAGCAGATTATATAGCAAAATGGTTGTTGAAATTGGACCCGCATAATTCAGGGAATTATGTGGCTCTTTCAAATGTATATGCAACTGTCGGAAAATGGGATGAAGTGTCAAATATAAGAAGATTCATGAAAGAAAAGGGTCTACGAAAGATTCCTGGGTGTAGCTGGATTCAAGTTGGACAAGAACTACACTATTTTATTGCTGGCGATAGATCACACCCTAAAACCGAAGAGATATATGTTACATTGGATTTGTTGGGATATGAAATGCATTAA 2565 0.4596 MIELSVQSHPPPFKFSIHDVTLPSSANSDHRDLHACMASLFPSVPNPPLHLPHSKPQNLANLTPKQFSHNHFSLLCKDGRIREAVDSLSEMQWRNLQAGPDLYGTLLQGCVYERALPLGIQIHAHLIKKGPSFYQNEFVESKLIILYAKCGASDVATRLFRDALSQNVFSWAAIIGLHTRTGRCEEALLGYIEMQNHGFLPDNFVVPNVLKACGFLRWVGFGKGVHAFVVKTTGLSECVYVATSLVDMYGKCGALEDAERVFDGMAERNNVAWNSMIVTYAHNGMNEEAIGMFREMRLQGVEVTPVALSGFFTACANLEAIGEGRQGQGLAVVGGLELDDVLGSSIMNFYFKVGMVEEAEVVFGEMVMRDVVAWNLVVSGYVQYGMVGKALEMCLVMREHNLRFDCVTLSSLLAVAADTRDVGLGMKAHGYCVKNDFQYDVVVSSGIIDMYAKCGRMDCARRVFSSTRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSVIFGFFKNGQVAEARNMFAEMCSSGVTPNLITWTTVMSGLAQNGLGCDAMMVFREMQDVGIRPNNMSITSALSACTSMALLKYGRAIHGYIMRHYMFQYLDIATTTIDMYAKCGALNDAKYVFSMCSTKELSVYNAMISAYASHGQAREALALFKQLGRKRIVPDHITLTSVLSACSHGGLVKEGIEIFNYMVSDLKMSPNQEHYGCLIKLLANDGQLDEALKTILTMPCHPDAHILGSLLAACGQNHDIELADYIAKWLLKLDPHNSGNYVALSNVYATVGKWDEVSNIRRFMKEKGLRKIPGCSWIQVGQELHYFIAGDRSHPKTEEIYVTLDLLGYEMH* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1569 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Vra2g1569 854 Gene3D Tetratricopeptide repeat domain 501 598 IPR011990 GO:0005515
Vra2g1569 854 Gene3D Tetratricopeptide repeat domain 330 425 IPR011990 GO:0005515
Vra2g1569 854 Gene3D Tetratricopeptide repeat domain 224 324 IPR011990 GO:0005515
Vra2g1569 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vra2g1569 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Vra2g1569 854 Pfam E motif 761 821 IPR046848 -
Vra2g1569 854 Gene3D Tetratricopeptide repeat domain 426 500 IPR011990 GO:0005515
Vra2g1569 854 PANTHER OS07G0578800 PROTEIN-RELATED 401 564 IPR045215 GO:0003723|GO:0009451
Vra2g1569 854 PANTHER OS07G0578800 PROTEIN-RELATED 56 368 IPR045215 GO:0003723|GO:0009451
Vra2g1569 854 PANTHER OS07G0578800 PROTEIN-RELATED 367 416 IPR045215 GO:0003723|GO:0009451
Vra2g1569 854 PANTHER OS07G0578800 PROTEIN-RELATED 552 841 IPR045215 GO:0003723|GO:0009451
Vra2g1569 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 642 676 IPR002885 -
Vra2g1569 854 Pfam PPR repeat family 269 317 IPR002885 -
Vra2g1569 854 Pfam PPR repeat family 645 689 IPR002885 -
Vra2g1569 854 Pfam PPR repeat family 505 553 IPR002885 -
Vra2g1569 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vra2g1569 854 Pfam PPR repeat 169 199 IPR002885 -
Vra2g1569 854 Pfam PPR repeat 473 500 IPR002885 -
Vra2g1569 854 Pfam PPR repeat 372 401 IPR002885 -
Vra2g1569 854 Pfam PPR repeat 344 370 IPR002885 -
Vra2g1569 854 Pfam PPR repeat 446 470 IPR002885 -
Vra2g1569 854 Pfam PPR repeat 716 740 IPR002885 -
Vra2g1569 854 Pfam PPR repeat 73 95 IPR002885 -
Vra2g1569 854 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 401 564 - -
Vra2g1569 854 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 552 841 - -
Vra2g1569 854 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 367 416 - -
Vra2g1569 854 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 56 368 - -
Vra2g1569 854 SUPERFAMILY TPR-like 628 800 IPR011990 GO:0005515
Vra2g1569 854 TIGRFAM PPR: pentatricopeptide repeat domain 645 677 IPR002885 -
Vra2g1569 854 TIGRFAM PPR: pentatricopeptide repeat domain 271 304 IPR002885 -
Vra2g1569 854 TIGRFAM PPR: pentatricopeptide repeat domain 508 541 IPR002885 -
Vra2g1569 854 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Vra2g1569 854 TIGRFAM PPR: pentatricopeptide repeat domain 345 372 IPR002885 -
Vra2g1569 854 TIGRFAM PPR: pentatricopeptide repeat domain 543 576 IPR002885 -
Vra2g1569 854 TIGRFAM PPR: pentatricopeptide repeat domain 473 507 IPR002885 -
Vra2g1569 854 TIGRFAM PPR: pentatricopeptide repeat domain 679 713 IPR002885 -
Vra2g1569 854 Gene3D Tetratricopeptide repeat domain 614 835 IPR011990 GO:0005515
Vra2g1569 854 Gene3D Tetratricopeptide repeat domain 68 219 IPR011990 GO:0005515
Vra2g1569 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vra2g1569 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1569 Vra-Chr2 23617728 23620946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1569 174 853 Glycoside Hydrolase AT3G49170 30.165 1.24e-101 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1569 - - gmx:100806010 1319.29