Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1564 ATGTCGGGGAAAGGGGCGAAGGGGTTGATCACCGGCAAAACCTCTGCCGCCAACAAAGATAAGGACAAGAAGAAGCCGATTTCACGTTCTTCTCGTGCCGGCCTTCAGTTTCCAGTTGGTCGTATCCACCGGCTATTGAAGTCAAGGACAACCGCTAATGGTAGAGTTGGGGCTACAGCTGCTGTTTACTCTGCCGCAATCTTGGAGTATCTCACTGCTGAAGTATTGGAGCTGGCAGGAAATGCTAGCAAGGATCTCAAGGTCAAACGTATTACTCCCCGGCATTTACAGCTAGCCATTCGTGGGGACGAAGAGCTGGATACCCTGATAAAAGGAACGATTGCTGGAGGAGGAGTGATTCCTCACATTCACAAGTCTCTTATCAACAAGTCTTCTAAGGAGTAG 405 0.4963 MSGKGAKGLITGKTSAANKDKDKKKPISRSSRAGLQFPVGRIHRLLKSRTTANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1564 134 CDD H2A 26 130 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra2g1564 134 Gene3D Histone, subunit A 13 134 IPR009072 GO:0046982
Vra2g1564 134 SMART h2a4 14 134 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra2g1564 134 ProSitePatterns Histone H2A signature. 33 39 IPR032458 -
Vra2g1564 134 PANTHER HISTONE H2A 2 133 - -
Vra2g1564 134 MobiDBLite consensus disorder prediction 1 33 - -
Vra2g1564 134 Pfam C-terminus of histone H2A 104 133 IPR032454 -
Vra2g1564 134 SUPERFAMILY Histone-fold 4 111 IPR009072 GO:0046982
Vra2g1564 134 PRINTS Histone H2A signature 25 47 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra2g1564 134 PRINTS Histone H2A signature 55 70 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra2g1564 134 PRINTS Histone H2A signature 70 83 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra2g1564 134 PRINTS Histone H2A signature 84 98 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra2g1564 134 PRINTS Histone H2A signature 111 129 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vra2g1564 134 Pfam Core histone H2A/H2B/H3/H4 18 102 IPR007125 GO:0003677
Vra2g1564 134 PANTHER HISTONE H2A 2 133 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1564 Vra-Chr2 23533316 23535458 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1564 K11251 - gmx:100499998 259.225