Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1546 ATGATTCCTCGGCTTCTGGGTGTCTATATAAACCGCCAATTCTTAATCAACGTTCGACATATCCTACGTTCCTTTGTTGCAGCGATTCAGACATCATACGATTTCGTTGCCATGTCCAATCCCAAATCAGAGACAGTGTCAGAATCCTCCGTTTCAGAGCCTCCACCGACGCAACCCTCTGTGCCCATTTCCTACCCAATCAAAACACTTGAGGAGTTGGAGTCTCGCTCGTATTTCGACTCCTTTCACTACCCTTTCAACAGGGCTTCGGTTCCCATTCTCAATGGAGGTTCTTCTTCGTTGCCCCAGAGGCGAAGATTGCTTGTCTGCCATGACATGGCTGGGGGCTACTTGGATGACAAGTGGATTCAAGGTGGCACTAACCCCGATGCTTATGCCATTTGGCATTGGCACTTGATCGATGTTTTTGTCTACTTTTCACACAGTCTCGTTACTCTTCCTCCTCCCTCCTGGACTAACACTGCTCATCGCCACGGCGTTAAGGTGTTGGGGACTTTCATTACTGAATGGGATGAGGGAAGGACTGCCTGTAATACATTGCTTTCAACAAAGGAAACTGCACATATGTATGCAGAACGTCTGGCAGAGCTTGCCGCTGATTTAGGTTTTGATGGGTGGCTAATAAATATGGAAGTGAATTTGGATCCTGGTCAAATTCCTAATTTGATAGAGTTTGTAGACCATTTATCACTAACAATGCATTCTTCTGTTCCTGGATCGTTAGTGCTATGGTATGACAGTGTTACAGTTGAGGGTAAATTGAATTGGCAAGATCAACTAAATGAACATAATAAGCCATTCTTTGATATATGTGATGGAATATTTGTGAACTATACATGGAAGGAAGACTATCCAAGGCTGTCTGCAGCTGTTGCCAATGAGCGGAAGTTCGATGTGTACATGGGAATCGATGTATTTGGAAGGAACACATATGGTGGTGGACAGTGGAATGTAGATGTTGCTCTTGATTTACTAAGAAAGAATGATGTCTCTGCTGCAATATTTGCTCCTGGATGGGTCTATGAGACAAAGCAAGCACCAGATTTTGAGACTGCTCAGAATAGTTGGTGGGGTCAGGTGGAAAAGTCATGGGGAGTACTGCGAAAATTTCCTGGACCATTACCATTCTACACTAATTTTGATCAGGGACGTGGTTACCATATTTCAGTTGATGGTGACAATGTATCAGATACAACTTGGTGCAACATTTCTTGCCAAGGTTTCCAGCCACAACTTAAGCTTCTTGATCCTTCAAATTCTATTCAAGTTTCTGTAGACTTGAAGGAAACATCATATAGTGGAGGGGGAAACATTACATTCAAAGGATCCCTTGAAGAGAAAACTTACTTTGAGAGCAAAATATTTCAAGTAGGGTTTCTTTTGAGCGAGTTGCCTGTCCACTTTATCTATACTGTGAAATCGGATAGCAATTCTTCATTAGGACTTAAGCTCGAGTTCACCTCCACTGGCGAAGGCAGAAGAGCATCTATTCTTCTTGCATCCCGGGAAGTGAATAACTTTTCAGACAAGTTCAGCAAAGTAATCATGACTCGTGAACGCAAGGGATTTTCCTCTGGATGGGTTATAAATGAAGGTGTAGTTGCAATGAGTGGATACACTTTAAGAGAAATTCATGCAGTGTGCTATAGATCAGATTCAAATGACAATGATGGAACTGTGGCTTCTCCATCAGAATATTTTGCACTTCTTGGTCACATCACAATCAAGAGTGTGGACTATAAGTCAGATTTTCCTCTGTCTTCTTCCTGGCTAGTTGATGGCAGCTGCATAAAATGGACATCAGACCCTCTGGGTTCAAAGACCCTTGATGTTAAGATTTCTTGGAAATTAAAACATGAGAATAGTTATCTATTTCTGAAGTTCAACGTTTACTTGGTAAAATTATCAAAACAAGCAGGTGGCAATCCAGGTACAACATTGGAGGATGTAAAAGAGTACCTTGGAGTAGCACAAGTAAGCTGTTTCTATGTTTCTGACCTAAAAGTTTCTTCAGACACTTCTACTCTCAAATTTATAATACAAGTCTGCGGTGTAGATGGGACAATTCAGGAATTGGACGAGTCTCCATATTATGAATTGGAGGTTGAAGGTCCTTAA 2139 0.4189 MIPRLLGVYINRQFLINVRHILRSFVAAIQTSYDFVAMSNPKSETVSESSVSEPPPTQPSVPISYPIKTLEELESRSYFDSFHYPFNRASVPILNGGSSSLPQRRRLLVCHDMAGGYLDDKWIQGGTNPDAYAIWHWHLIDVFVYFSHSLVTLPPPSWTNTAHRHGVKVLGTFITEWDEGRTACNTLLSTKETAHMYAERLAELAADLGFDGWLINMEVNLDPGQIPNLIEFVDHLSLTMHSSVPGSLVLWYDSVTVEGKLNWQDQLNEHNKPFFDICDGIFVNYTWKEDYPRLSAAVANERKFDVYMGIDVFGRNTYGGGQWNVDVALDLLRKNDVSAAIFAPGWVYETKQAPDFETAQNSWWGQVEKSWGVLRKFPGPLPFYTNFDQGRGYHISVDGDNVSDTTWCNISCQGFQPQLKLLDPSNSIQVSVDLKETSYSGGGNITFKGSLEEKTYFESKIFQVGFLLSELPVHFIYTVKSDSNSSLGLKLEFTSTGEGRRASILLASREVNNFSDKFSKVIMTRERKGFSSGWVINEGVVAMSGYTLREIHAVCYRSDSNDNDGTVASPSEYFALLGHITIKSVDYKSDFPLSSSWLVDGSCIKWTSDPLGSKTLDVKISWKLKHENSYLFLKFNVYLVKLSKQAGGNPGTTLEDVKEYLGVAQVSCFYVSDLKVSSDTSTLKFIIQVCGVDGTIQELDESPYYELEVEGP* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1546 712 PANTHER BETA N-ACETYLGLUCOSAMINIDASE, PUTATIVE-RELATED 4 711 - -
Vra2g1546 712 CDD GH85_ENGase 108 426 - -
Vra2g1546 712 Pfam Glycosyl hydrolase family 85 117 394 IPR005201 GO:0005737|GO:0033925
Vra2g1546 712 Gene3D Glycosidases 57 375 - -
Vra2g1546 712 PANTHER ENDO BETA N-ACETYLGLUCOSAMINIDASE 4 711 IPR032979 GO:0033925
Vra2g1546 712 Gene3D - 380 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1546 Vra-Chr2 23365349 23372205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1546 57 710 Glycoside Hydrolase AT5G05460 56.061 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1546 K01227 - gmx:100804658 1226.85